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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S129.g03831.01.t

Possible name(s)

RAB18; RAB2A; RAB2B

Gene model

Phmamm.CG.MTP2014.S129.g03831

Location

S129 [78,217 / 79,446]

Sequences

Amino acid sequence

Length: 199

>Phmamm.CG.MTP2014.S129.g03831.01.p
MDGEDVLTTLKILIIGDSGVGKSSLLLRFTDDKFDPDQSATIGVDFKVKSLTIDGNTVKL
AIWDTAGQERFRTLTPSYYRGAQGVIFVYDCTRKDSFTRLDTWLSEVDTYSTKPTIKMLV
GNKIDKEDRVVTRDEGLKFARRHRMLFIEASAKTRDGVEYAFEELVEKIIQTPGLWEHDG
GGKKIKLDSEQQPAGLCSC

Nucleotide sequence

Length: 600

>Phmamm.CG.MTP2014.S129.g03831.01.t
ATGGACGGCGAAGACGTTTTAACCACTTTAAAGATTTTGATTATTGGTGACAGTGGTGTT
GGAAAATCAAGTTTGTTGCTGAGATTTACTGATGACAAATTTGATCCTGATCAATCAGCG
ACAATTGGTGTTGATTTTAAAGTAAAATCACTAACAATTGATGGAAACACAGTGAAATTA
GCAATTTGGGATACTGCGGGCCAGGAGCGATTTCGCACTTTGACTCCGAGCTATTATCGT
GGAGCACAAGGAGTTATATTTGTGTACGATTGCACCAGAAAAGATAGCTTTACCCGGTTG
GACACATGGCTATCTGAGGTTGACACTTATTCCACTAAACCCACAATTAAGATGCTGGTT
GGAAACAAAATTGACAAGGAAGACAGAGTGGTAACCCGTGACGAGGGTCTTAAATTTGCC
AGACGACATCGCATGTTGTTTATCGAAGCCAGTGCAAAAACGAGAGATGGTGTCGAGTAT
GCCTTTGAAGAACTTGTTGAAAAAATTATCCAAACCCCTGGATTATGGGAACATGATGGC
GGCGGCAAAAAAATTAAACTCGACTCTGAACAACAACCAGCGGGCCTATGTTCCTGTTAG

InterProScan

SUPERFAMILY
P-loop_NTPase (IPR027417) - T[9-176] 2.92E-57
TIGRFAM
Small_GTP-bd_dom (IPR005225) - T[9-164] 9.0E-31
Pfam
Small_GTPase (IPR001806) - T[11-170] 3.6E-57

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RAB18_HUMAN 74.737 % 292 8.02E-102
RAB2A_HUMAN 48.663 % 176 2.92E-56
RAB2B_HUMAN 48.663 % 174 3.53E-55