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  1. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1289.g14381.01.t

Possible name(s)

PDE6D; UNC119; UNC119B

Gene model

Phmamm.CG.MTP2014.S1289.g14381

Location

S1289 [22,645 / 27,652]

Sequences

Amino acid sequence

Length: 150

>Phmamm.CG.MTP2014.S1289.g14381.01.p
MAMESQHVADVLNGFKLNWMNLRDASSGKIMWEGTQDLSVPGREHQARVPKKILKCKAVS
REINFSSQQLMEKFRLEQRILFHGRCLEEWFFEFGFVIPESTNTWQSIIEAAPASQMMGA
DVLSGNVVIETNFFDDELLVSTSKVRLFYV

Nucleotide sequence

Length: 2,161

>Phmamm.CG.MTP2014.S1289.g14381.01.t
ATGGCCATGGAGTCGCAACATGTTGCTGATGTTCTAAATGGATTTAAACTAAATTGGATG
AATCTTCGAGATGCTTCATCAGGAAAGATTATGTGGGAGGGAACGCAAGATCTTTCAGTC
CCAGGACGAGAACACCAAGCTCGTGTGCCAAAGAAGATTCTTAAGTGCAAAGCTGTTTCT
CGTGAAATCAATTTTTCCTCACAACAACTAATGGAAAAATTCCGACTTGAACAACGAATC
TTGTTCCATGGCCGATGTTTGGAAGAATGGTTCTTTGAATTTGGCTTTGTCATTCCCGAG
TCAACAAACACATGGCAATCAATAATAGAAGCTGCTCCTGCTAGTCAAATGATGGGAGCT
GATGTTTTGAGTGGAAATGTTGTGATTGAAACCAATTTTTTTGACGATGAACTACTCGTC
AGTACCTCAAAAGTGAGACTATTCTACGTTTGATCAAAGATTTAAGCTCAATCAAATTTG
CCAAAACCTATTTAACTGTGACCCATTTTTCGCGAACGACTTAAATTTCATGTTAAGATG
GCTCATTTATAACTGTCACCGTGTTTGTAAAAACTGTAAAGCATCAATGTCCTTTCTTCT
GTTTTAGCAAAAAAGCCATAGGTTTGCTTCTATTTCAGAAACAAAATGCTCAAAATTTGT
TTTGCACATAATTATTAAGTTTATATTTTGTCTGTTTAATTTGTTTACTTGTTAGAAGTA
TGATTTATAGACACCAGCTGAACTAACACATTTTTTGAAAGCACACTAGCAACTATTATA
CGCAAAGCCTTACTTGTATATACGTGTTTGTTCACCATAGAGCTATATTTTCAATTGACT
TAGTTGTAGTGATTAGTATTTTCATTATTTCATGCATTGGCCGTTTTCAAGACTATTCTT
GCAAATATTTTGCATTTTTTTGGTGCTGTTTATGTGTTTTGTTGTTTCTTATGTTAAATA
ATCTGTAATTATAAACGTAACAGTTTTAATGCAGTGTATAGTCAAGTAAAACAAAAATTA
AAAGTCCGCTTAAATTTTGAACAGAAATTGGAAAAAAACTTTCAACAAACAAACTCTGAA
CTTTTTATTGCTCAATAAAACTTATTGTTTTCGTGATTTTTGCTTGATGTTAACATTTTA
CACCTAATATCACCAAAAATCTAAAGTGGATTTTATTTTGTTTTTTCTGTTTACTTGTCC
ATAATTGTGCACTTAAATATTAAAACCTTGACTAAAATCTGAGTATTACATGAACTTTGT
CATAAAGCCAAGTAAAAAACAACAACTTGTTTATGTCAGCATTTATGTACTGACCTGCCT
GTTATGCAAATTTTTTGGTAGAAACTGCAATTCTCCACATACTCGCTCTGTAGATGTTTA
GTACTCGGTGCACAAACAATAAAACTAAACTTTTTCACTTTTGTCTCATAAATTTATTTC
TTTATTATGCTAAAATGCAGTATTGTTTTTACTTGCTGATATAACACAGTAAAATTGATT
TGACTTGGGTAAACCACAATGTACACAATTGCAATAATTTATGCTACTTAAACCAATTTA
AACATGACGAAGTTCTCAAAAAAGGAATCAATAAAAATGCATAAATAGGCAAGTATCTCA
AAGAAACAAAAAATACATTTTCTTACAGAAGTTAAAAAGCACATTGCAACATATTAAATT
TGTTGATTTGACACAAGTAACATTATATTTATATTCGTACTTTATTGTATTGTTACTGCA
GTTATGCATTTACTGAACCATTTTAAAGGTACAACACACTTTGTTAAACTGGATTCGGTA
AATCCAGATCTTCCCCTAATCGGGACAATTTTTTTGTTCCAAACCAAAGGTTTACTGTTT
ATAGCTTTGAATAGTTTCCTTATTCTAACATTACTTAAATCAAAACGATTCATACTTCTT
GCCTTAAGCTTTTTTAGCAATGGGTTACAGCACTGATAGACTTAATATCAACTACATCAC
TGCCTTTCAAACTTCCCAAATGTATTTTTCCAATCTGACATAGCATGTTAGGTTATTTCC
AACCACAGGGACAAGCAGCTTTATGCATCAGGGTTTTCATCTTTTAAATGCTCCTTCACC
ATTTTGCAATACTTCATTGCCAGACACAGCAACACTCGAAAACCTGGATTCATCTTCAGA
C

InterProScan

PIRSF
Rhodop-sen_GMP-Pdiesterase_dsu (IPR017287) - T[1-150] 1.6E-73
Gene3D
PDED_dom_sf (IPR037036) - T[1-150] 3.9E-71
SUPERFAMILY
Ig_E-set (IPR014756) - T[7-150] 1.68E-51
PANTHER
Rhodop-sen_GMP-Pdiesterase_dsu (IPR017287) - T[7-150] 3.6E-75
Pfam
PDED_dom (IPR008015) - T[11-149] 1.6E-43

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PDE6D_HUMAN 75.333 % 249 1.76E-86