- Molecular Tool 'Hox5-MO (Ikuta 2010)' >
- Transcript 'Harore.CG.MTP2014.S2...' >
- Transcript 'Phmamm.CG.MTP2014.S7...' >
- Transcript 'Phmamm.CG.MTP2014.S4...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1247.g14237.02.t
Possible name(s)
MALRD1; MDGA1; MDGA2
Gene model
Location
S1247 [29,343 / 33,787]
Amino acid sequence
Length: 698
>Phmamm.CG.MTP2014.S1247.g14237.02.p
MGVTGEITSPGFNSGKYPPSAYCVWQITVPFGKQVQLKFESIDIEYAPPECSFDGVVMYD
VTGDFTLNVTNELQTSRYIGKARFCGDLDVEPVKSRTNRVVVAFYSDDDMEAKGFNLTWT
AVDTPPDQFNCDFEQGLCEGWVDLGFPNDQFDWEFQKRGTRTAMTGPTYDHTLKNENGQY
AFIEASLPRVPDDEAILITPEQTFGVDVTEMCLKFWYHMYGSSIGSLKVAVMVGNTSTIS
WFKSGNQGQMWIEGRLTITHQNEPFRIVFIGVRGRSHQGDIALDDITIEDGSCSPVTTQE
TPVESQATSTTASATSPPLNCGQFEYECASGTKCVPMFFLCDGQEDCPGNDDEQNCPDIN
DILPPILTTSGPDTTTTEEPSSTLSVVTSQAVTTTLQVQGCPDDYVACNAGNCIPAFWLC
DGEIDCLPDGEDEFNCPDEGVDNGIDWVDYGLIDNSTDIDNFTTSTSAEVTTQTLSVAES
TSLATSAEATTTADVTTSVTSMSTSSMTTSIIPTTAETTESETEMTETTETEETRVETTE
SDVITTVTDAVITATTTVAVSTTQTDAASTTKMLATESHTTTTAGDASIASQTTDVTSST
TASEVTTSEATSVVTTPTLAVTSDDAIAETVSLTPKPVSTTKTTTKTPVVTTTLQSLATG
AKRGGDGGAASVRSQSIFVLLLQTLATVFIAMGLCSWR
Nucleotide sequence
Length: 2,097
>Phmamm.CG.MTP2014.S1247.g14237.02.t
ATGGGTGTAACCGGAGAAATAACCAGCCCTGGATTTAACTCAGGAAAATACCCACCAAGC
GCCTACTGTGTGTGGCAAATCACTGTCCCATTCGGCAAGCAAGTACAGTTGAAATTCGAA
AGCATTGACATCGAGTACGCGCCGCCCGAGTGCTCCTTCGACGGTGTCGTCATGTATGAC
GTCACTGGCGATTTTACTCTAAACGTCACGAACGAGCTACAGACCAGTCGCTACATTGGA
AAGGCTCGGTTTTGTGGGGATTTGGACGTTGAACCAGTTAAAAGTCGCACAAACCGTGTG
GTTGTAGCCTTCTATTCTGACGATGATATGGAAGCTAAAGGTTTTAACCTAACCTGGACA
GCAGTAGACACTCCGCCTGATCAGTTTAACTGCGATTTCGAGCAAGGTTTGTGCGAAGGA
TGGGTTGACTTGGGTTTTCCCAACGACCAGTTTGATTGGGAATTTCAAAAGCGCGGAACC
AGAACAGCAATGACCGGACCAACATACGACCACACACTGAAGAATGAAAATGGCCAGTAT
GCGTTTATTGAAGCATCTCTGCCTCGCGTACCTGATGACGAAGCAATTCTTATCACCCCA
GAGCAAACTTTTGGCGTTGATGTCACCGAAATGTGCCTCAAATTTTGGTACCATATGTAT
GGAAGCAGCATTGGTTCTCTTAAAGTTGCTGTTATGGTTGGCAACACCAGCACCATCAGT
TGGTTTAAATCTGGTAACCAGGGTCAAATGTGGATCGAGGGAAGATTAACCATCACACAC
CAGAACGAACCATTCCGGATTGTGTTTATCGGGGTGAGAGGTCGAAGCCATCAAGGAGAT
ATCGCTCTTGACGACATCACAATAGAAGACGGCAGCTGTAGCCCAGTTACAACGCAAGAA
ACACCGGTCGAAAGCCAAGCCACCAGCACTACGGCTTCAGCAACATCTCCACCACTAAAC
TGCGGGCAGTTCGAATACGAGTGCGCCTCTGGAACTAAATGTGTCCCCATGTTTTTTCTC
TGCGACGGACAGGAAGATTGCCCTGGCAACGACGATGAACAAAACTGCCCTGATATTAAC
GACATTTTGCCGCCAATTTTGACCACGTCTGGACCCGACACTACTACAACTGAAGAACCA
TCATCAACGTTATCAGTAGTGACGTCACAGGCTGTTACAACTACTCTTCAAGTTCAAGGT
TGCCCCGACGACTACGTGGCATGTAATGCAGGCAATTGCATCCCAGCGTTCTGGCTCTGC
GACGGTGAAATTGATTGCTTGCCCGACGGAGAAGATGAGTTTAATTGTCCGGACGAAGGA
GTCGACAACGGTATTGACTGGGTCGACTATGGTCTCATCGACAACTCAACCGACATAGAC
AACTTCACAACAAGCACCAGCGCAGAAGTAACAACGCAGACTTTGTCCGTCGCAGAGTCT
ACCTCCCTAGCGACATCTGCGGAAGCTACCACCACGGCAGACGTCACAACCAGTGTGACG
TCAATGTCGACAAGTAGTATGACGACATCGATTATTCCGACTACAGCAGAAACTACGGAA
AGCGAGACTGAAATGACGGAAACCACTGAAACTGAAGAAACACGAGTCGAAACTACCGAA
AGTGACGTCATTACCACTGTTACCGATGCCGTCATAACAGCCACAACAACTGTTGCCGTT
TCAACGACACAAACCGACGCTGCATCAACAACGAAAATGCTTGCCACGGAAAGTCACACC
ACCACAACGGCAGGTGACGCCAGCATTGCGTCACAAACCACTGACGTCACAAGCTCGACT
ACAGCTTCAGAAGTTACCACCTCTGAAGCCACCTCAGTCGTCACCACCCCAACCCTTGCC
GTCACCAGTGATGATGCAATCGCAGAAACCGTCTCACTTACCCCAAAACCTGTATCAACA
ACAAAAACAACCACCAAGACGCCCGTTGTCACCACAACCCTTCAGTCGCTGGCGACTGGA
GCCAAGCGCGGAGGTGATGGGGGCGCCGCAAGTGTCCGGAGTCAGTCGATATTTGTCCTA
TTGCTGCAGACCTTGGCAACAGTGTTCATTGCCATGGGTCTGTGCTCATGGAGATGA
| SMART |
CUB_dom (IPR000859) - T[1-122] 7.8E-19 |
| ProSiteProfiles |
CUB_dom (IPR000859) - T[1-122] 19.621 |
| Gene3D |
Sperma_CUB_dom_sf (IPR035914) - T[2-120] 4.4E-24 |
| SUPERFAMILY |
Sperma_CUB_dom_sf (IPR035914) - T[2-122] 1.57E-23 |
| Pfam |
CUB_dom (IPR000859) - T[4-118] 4.9E-17 |
| CDD |
CUB_dom (IPR000859) - T[4-121] 4.62611E-25 |
| SMART |
MAM_dom (IPR000998) - T[126-295] 4.3E-34 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[128-293] 1.23E-38 |
| ProSiteProfiles |
MAM_dom (IPR000998) - T[129-295] 34.226 |
| Pfam |
MAM_dom (IPR000998) - T[131-294] 3.4E-37 |
| CDD |
MAM_dom (IPR000998) - T[131-293] 6.04648E-46 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[317-357] 1.96E-8 - T[398-436] 1.44E-8 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[320-357] 12.0 - T[400-437] 9.975 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[320-356] 1.6E-8 - T[401-436] 2.2E-7 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[320-358] 7.8E-10 - T[400-438] 6.8E-9 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[321-356] 3.91695E-9 - T[401-436] 2.75052E-11 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[332-353] 5.0E-8 - T[411-432] 5.0E-8 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[413-436] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MDGA2_HUMAN | 38.122 % | 112 | 1.88E-25 |
| MDGA1_HUMAN | 36.548 % | 112 | 1.88E-25 |
| MALR1_HUMAN | 33.761 % | 122 | 2.26E-28 |