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TRANSCRIPT CARD

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  1. Transcript 'Haaura.CG.MTP2014.S1...' > 
  2. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S123.g03685.02.t

Possible name(s)

RNF13; RNF167; ZNRF4

Gene model

Phmamm.CG.MTP2014.S123.g03685

Location

S123 [83,002 / 88,495]

Sequences

Amino acid sequence

Length: 423

>Phmamm.CG.MTP2014.S123.g03685.02.p
LPQVFLAPIVYSDVIGYDKSNISESFQDYEAEFGTTIESTIVGILAAANPFDACHAIKPW
PFPNKPTNQTVSTFVLIMRGGCDFGIKVLNAQNANFDAAIVFDPESETLVRMSSSEAAIT
DKITIPSVFVGRTAGWKLNESYLYIYGTSPSVQITAGYYPFSIKYYIVPFVTVVGTCFAA
LLAFMFVKYLRDRRRQRRNRLSRQRLKQLPVKQFHKGDEYDVCAICLDEYEEGDKLRVLP
CQHAYHCKCVDPWLTSSKRVCPLCKRRVLSDDESSNSDTDYSDDDSEHAPLLRHAVASSP
NSATLATGFSSRNPILRSYSNSTVTSVGSTSHHSIVDEETPHNSMMDLHGQAGSPIFHSF
RQTDSPSPHSLTVTADITPARPVILPQHSDEEYSCASSPVVGSEISSYKDAEEIFVVSGA
FQT

Nucleotide sequence

Length: 1,269

>Phmamm.CG.MTP2014.S123.g03685.02.t
CTGCCTCAAGTTTTTCTTGCTCCCATTGTCTACAGTGATGTCATTGGGTATGACAAGAGC
AACATATCAGAGTCATTCCAGGACTATGAAGCAGAATTTGGCACAACAATAGAGAGTACA
ATTGTGGGCATATTGGCTGCAGCTAATCCATTCGATGCTTGCCATGCAATCAAACCTTGG
CCTTTTCCAAACAAACCGACCAATCAAACTGTCAGTACTTTTGTTCTTATTATGAGAGGA
GGTTGTGATTTTGGGATCAAGGTGTTGAATGCTCAAAATGCAAATTTTGATGCTGCTATA
GTTTTTGATCCAGAATCTGAAACTCTGGTCCGTATGAGCTCTTCAGAAGCAGCGATTACT
GACAAAATAACAATTCCCTCTGTGTTTGTGGGGCGAACTGCGGGTTGGAAACTGAATGAA
TCTTATCTTTACATTTATGGGACCTCTCCCTCAGTTCAAATTACAGCTGGATATTATCCC
TTTTCCATCAAATATTACATTGTACCATTTGTAACTGTGGTTGGCACATGCTTTGCTGCA
TTACTAGCCTTTATGTTTGTAAAGTACTTGCGGGATCGAAGGAGACAGCGGCGAAATCGT
TTGTCCCGGCAACGCTTGAAACAGCTTCCAGTCAAGCAGTTTCATAAAGGAGATGAATAT
GATGTTTGTGCCATCTGCCTTGATGAATATGAAGAGGGGGATAAGTTAAGAGTGTTGCCA
TGTCAACATGCGTATCACTGCAAGTGTGTTGATCCCTGGCTAACAAGCAGCAAGCGAGTA
TGTCCATTGTGCAAACGACGAGTACTCAGTGATGATGAATCTTCCAATTCAGACACAGAT
TACAGTGACGATGATAGTGAGCATGCTCCTTTACTACGTCATGCCGTTGCCTCATCTCCA
AACTCAGCAACATTGGCCACTGGATTTAGTTCTCGAAATCCAATTTTGCGAAGCTATTCA
AATAGCACTGTCACAAGCGTGGGATCAACTAGTCATCACAGCATTGTTGATGAAGAAACA
CCACACAATTCTATGATGGACCTTCATGGACAGGCTGGGTCGCCAATTTTTCATTCTTTT
AGGCAAACTGATTCGCCGAGCCCTCACAGCCTTACTGTCACAGCAGATATAACACCAGCT
CGTCCAGTAATTCTACCTCAACACTCTGATGAAGAATATAGTTGTGCAAGTAGTCCAGTA
GTGGGAAGTGAAATAAGTTCCTACAAAGATGCTGAAGAAATTTTTGTTGTTTCCGGCGCA
TTTCAAACA

InterProScan

Pfam
PA_domain (IPR003137) - T[72-137] 4.6E-8
Gene3D
Znf_RING/FYVE/PHD (IPR013083) - T[187-270] 2.9E-19
Pfam
Znf_RING (IPR001841) - T[222-265] 4.3E-13
SMART
Znf_RING (IPR001841) - T[223-264] 2.6E-8
ProSiteProfiles
Znf_RING (IPR001841) - T[223-265] 12.814

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RNF13_HUMAN 43.614 % 244 1.68E-77
RN167_HUMAN 43.2 % 204 4.96E-62
ZNRF4_HUMAN 33.212 % 145 4.61E-39