- Transcript 'Phmamm.CG.MTP2014.S1...' >
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- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1223.g14144.01.t
Possible name(s)
CRNKL1; PABPN1L; SART3
Gene model
Location
S1223 [12,910 / 22,944]
Amino acid sequence
Length: 832
>Phmamm.CG.MTP2014.S1223.g14144.01.p
DPTVDANESDASSNEEDMEEEGLIQKQIEELDENIKTSPYNYQHHVDRIELLRKIGEFEQ
LRTARKGMSNIFPLTKDLWLNWLEDEQKFAETDDDHKKLEELFELSTKDYLCPEIWLEYA
QYSIRLIGNEGGIAKLRSIMERALSEVGLHVSKGSSVWEAYREIENAILMTMQPPPGSIS
SAEQLNRLSEQTDRVGLLFVRQLAIPLLDMENTMTEYQEWRKSVEDGEINIEITESYQES
LSRLKKLAELENILEEAKMPKLDAYHQYIEYEKESHDPARVQCIYERAIADNCLNSDLWF
QYIKYLVETIKTGPVVLSVHERSVRNCPWVAQLWTKYLICLERNKASPEKMQKVTSDALA
AGFSSAGDYALLWQVSCDQARRRVTESDKENLETSKKSLHDVFKNATSHLLNVVLPAFNE
TGDPDFTLWCYWARCEARLLSNIAQAREVLDDVLEDVDARRKWSIWLDYFQIEMEFGDVK
KARTVLRKALQSTAADDGSAESAASHLIQFEREFGSLEDLEDATRKVEGRMAKVAKRKEK
VATHFQNKTKRRQQNPQSDRKEKVSPKSGQDAKKRPRSSKSDVDFIPEKRQRNDKDEIVQ
DTGFKAPSGLPARLAKPKSKLPEQGQGEKPKANAKPPPPGFHQTTTGNTTTNAKPLVKIE
PTNDLKSDEGKGQKFTPTAESDERTIFVSNLGYSVENLDDKLHKIFGACGEVESVRLAKN
NKGQIRGFAYVQFLAKSSVDDALKLDREVLEGRPMFVSPNVDKTKNPDFKVCQIITYTRI
SPKSFTFKIHFFRGSRYLNTTLAWNDTSYLYQVCPSQQPKTNCVKFFHNTVN
Nucleotide sequence
Length: 2,945
>Phmamm.CG.MTP2014.S1223.g14144.01.t
GATCCAACCGTTGATGCCAATGAAAGCGACGCGTCGTCCAATGAAGAAGATATGGAGGAG
GAGGGATTAATTCAGAAACAAATTGAAGAGTTAGATGAAAACATTAAAACATCACCCTAC
AACTACCAACATCATGTTGACCGCATTGAACTATTGAGAAAAATTGGTGAGTTTGAGCAG
TTGCGGACAGCAAGAAAAGGCATGAGCAATATTTTTCCTTTGACAAAGGACCTGTGGTTA
AACTGGCTTGAAGATGAACAAAAGTTTGCAGAAACTGATGATGACCATAAAAAGTTAGAA
GAGCTTTTTGAACTATCTACCAAAGACTATTTGTGTCCAGAAATTTGGTTGGAGTATGCG
CAGTATTCAATTCGTTTAATCGGGAATGAAGGTGGAATTGCTAAGTTGCGTTCAATAATG
GAGAGGGCTTTGTCTGAGGTGGGACTTCATGTGTCAAAAGGATCTTCAGTTTGGGAAGCC
TACAGAGAAATAGAAAATGCAATTTTAATGACAATGCAACCACCACCAGGGAGTATAAGT
TCTGCTGAGCAGTTGAACCGCTTATCTGAACAAACTGATCGAGTTGGTTTACTGTTTGTA
CGTCAACTTGCAATTCCTTTATTGGACATGGAGAACACCATGACTGAGTACCAAGAATGG
AGAAAGAGTGTTGAAGATGGTGAAATCAATATTGAAATCACTGAAAGCTACCAGGAAAGC
TTGTCTCGACTGAAAAAACTTGCAGAATTAGAAAACATACTGGAGGAAGCCAAGATGCCC
AAGCTTGATGCTTACCACCAATACATTGAATATGAAAAGGAATCACATGATCCAGCAAGA
GTGCAATGTATTTATGAACGTGCTATTGCAGACAATTGCTTAAACTCAGACCTTTGGTTT
CAATACATAAAATACTTGGTGGAAACCATCAAAACTGGACCAGTGGTTTTGTCCGTCCAT
GAACGAAGTGTTCGAAATTGCCCTTGGGTTGCACAATTGTGGACCAAGTATCTCATTTGC
TTAGAAAGGAATAAAGCTTCTCCTGAAAAGATGCAGAAAGTGACATCAGATGCATTGGCT
GCAGGGTTTTCTTCTGCTGGTGATTATGCCTTGTTATGGCAAGTTTCCTGTGATCAGGCT
CGTCGACGAGTTACTGAAAGCGACAAAGAAAATCTTGAAACCTCCAAAAAATCTCTGCAT
GATGTTTTCAAAAACGCCACATCCCATCTACTTAACGTTGTTTTGCCAGCCTTCAACGAA
ACCGGTGATCCAGACTTCACTTTGTGGTGTTACTGGGCTCGCTGCGAGGCGAGGCTTCTT
AGTAATATTGCTCAAGCAAGAGAAGTGTTGGACGACGTTCTGGAAGATGTGGACGCCAGA
AGAAAGTGGAGTATATGGCTCGACTATTTTCAGATTGAAATGGAGTTTGGTGATGTGAAA
AAGGCAAGGACTGTTTTGCGAAAAGCTTTACAAAGTACAGCAGCTGACGATGGTTCGGCC
GAATCAGCAGCCTCGCATCTAATTCAGTTCGAACGGGAATTCGGAAGTTTGGAAGATCTG
GAAGACGCTACCCGCAAAGTAGAAGGAAGAATGGCCAAAGTCGCCAAACGTAAAGAAAAG
GTTGCTACACATTTTCAAAACAAGACAAAACGTCGACAACAAAATCCTCAGTCTGACAGA
AAAGAGAAAGTGTCACCGAAATCTGGCCAGGACGCAAAGAAACGTCCACGGAGTAGTAAG
TCTGACGTGGACTTCATTCCTGAAAAACGCCAACGAAATGATAAAGATGAAATAGTCCAA
GATACTGGTTTCAAAGCTCCTTCAGGTTTGCCTGCCAGGTTAGCCAAACCGAAATCCAAA
CTGCCCGAACAAGGTCAAGGTGAGAAACCGAAAGCTAACGCAAAACCACCTCCGCCAGGA
TTTCATCAAACCACAACAGGTAACACAACAACTAATGCGAAGCCACTGGTCAAAATTGAA
CCTACCAATGATCTCAAAAGCGACGAGGGCAAAGGCCAGAAGTTTACACCCACGGCGGAA
TCCGATGAGCGAACAATATTCGTCAGTAACCTCGGATACTCGGTGGAAAACCTGGACGAC
AAGTTGCACAAGATCTTCGGTGCGTGTGGTGAAGTTGAGTCGGTGCGTTTGGCAAAAAAC
AACAAAGGACAAATCCGCGGCTTCGCCTATGTTCAATTTCTTGCCAAGTCAAGTGTGGAT
GATGCATTGAAACTTGACAGAGAGGTTTTGGAGGGACGACCGATGTTTGTTTCACCCAAT
GTCGACAAAACGAAAAATCCGGATTTCAAGGTGTGTCAAATAATCACTTATACGCGTATA
TCACCCAAATCCTTTACCTTTAAAATACATTTTTTTCGTGGCAGCAGGTATTTAAATACG
ACACTGGCATGGAACGACACAAGCTATTTGTATCAGGTCTGTCCTTCACAACAACCGAAG
ACGAACTGCGTCAAATTTTTTCACAACACGGTAAACTGAAATCGCTTCGAATCGTCACGA
CCAGAAGTGGGAAGCCGAAGGGTTTAGCGTATGTGGAATACGAGACGGAAGCAGATGCAG
CACAAGCTGTAATGAAAACAGACCAAACTGTTGTTGGCGGATTCACTATTACGGTGGCGA
TTAGCAATCCACCGTCACGTAACAAAGGTAGTGAAGATCGAACAAGGCAGGTTTCAACAA
ACAGGGGAGGAACGCGCGGCCGAGCACGAACACAGGTAAACCTGCTCCCACGAACCTTGC
AACGGCCCAACACAACCACTGATAAACCTAAGTTGGAGAGAGATGCCAATTATAACGAAG
TGAAAAGCCAGGCACTAAGCAACAAGGATTTTGCAAAGATGTTCAGTCATCCATGACAAG
TGGCATTTGTTTACAGCTTCAAAGAAGTGGCTTGTGCATGCGCTTGCCACGGTATAAGAA
CTACG
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[31-235] 1.5E-39 - T[236-565] 1.5E-41 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[33-540] 2.05E-52 |
| SMART |
HAT (IPR003107) - T[56-88] 150.0 - T[94-125] 2.5 - T[131-167] 21.0 - T[276-308] 0.086 - T[311-343] 100.0 - T[441-475] 120.0 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[677-765] 2.17E-18 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[679-762] 2.1E-18 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[684-762] 15.596 |
| SMART |
RRM_dom (IPR000504) - T[685-758] 5.3E-13 |
| CDD |
SART3_RRM1 (IPR034217) - T[685-758] 3.89906E-30 |
| Pfam |
RRM_dom (IPR000504) - T[686-754] 9.1E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SART3_HUMAN | 37.963 % | 493 | 4.79E-161 |