- Transcript 'KH2012:KH.C4.351.v1....' >
- Transcript 'Moocci.CG.ELv1_2.S62...' >
- Transcript 'KH2012:KH.L116.19.v1...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1110.g13711.01.t
Possible name(s)
PTPRF; PTPRQ; USH2A
Gene model
Location
S1110 [9,398 / 20,676]
Amino acid sequence
Length: 1,339
>Phmamm.CG.MTP2014.S1110.g13711.01.p
MTCVGIPGRVATPTFATTSNSITATWSPPTSPNGMITAYRVSWTPVTGDGTSGNLTASTT
SYTIPRLTPYTEYSITVFAQTAVGENAGTVASQRTDEDVPLEAVRNVVLTPSTTGVVVSY
DPPAVVTGIFIFLLEYRLTSNPSDSFRASTSPTAISALDAFTSYTIRITVSTGAGVGPSV
TRTFTTDQGIPGEITNPISLAFTTTTATVQWEAPLTPNGIITEYKIFWTEDGVDMEDTVA
ASFTTYEITGLQPFTTYSVQIVASTIAGDSSGVVVMATTDEDVPDAPILGLFVNDDNSFD
IIITQASRPKGLTLYNEIRIRQNISQCTVLADTDCYNVTETLPASQTTFTTEVLLGFRSF
IFSVRANTSAGFGPPATITARTNTVAAGIVSNVILTPFNSTAITVSWTTARPVPGPSNYT
ITATDFSGVTTTVTVVDPDGTALELNSSIAGLTPGSLYTVTVTQFTVVGSGPTSPISVLT
RAATPVAGAQPNVSVAQNLLGASATQAFAIANPCNNVGTFFSLASGTILGVDVIIRESGS
SSTEISYWAEASVLNPTPQYFAATIQCIPALGRKKRRVSDDEQTFVCGHDQTCDIALVRS
LCNGPLAPGRSYEVAFRADTGAPEGKSDPTDFSAPVTTGIEGTTSLPGTDEINSTPTPTS
AAGSILNTTTTVSTSTTLPTLQTTTRTTTSSTTSTSTTLPTTTTEESTTSTSAPNQVLQP
IPEARPNIEVSQELPGRLREQAFAVQNPCLSLDRLFGANDGDETNVEIVVKEEDANPEGA
EIGVWATSITQNPIGLYVAASMSCSSSARKRRNLDPDDERFVVGLDQTCVRDRREVCNGP
LPPDRSFQVAIRSGNEFEKSELTEFSDPISTLGCGGQCNGGTVCRSVSSENAEPELMCVC
EASECTGQPLASIPCIENRTRDGFIVGNFDVSLLVVISCRDLTIPDVVLMTDVEVITETE
LEQVLVELDVRTSDVNILNEEDVSSTVDFILSVGSTSRDMMITPFSYRSVIAIGDHVSNF
QMSNRSIGFVNQSALIESLTSLAYRVPMLPNEDPLDVLTPTVAARVQDIMELNISVTYQP
EIYNASGQLFSPASIEVPQEAVLRSQPNNDAESAVQSRTPGFQGARVVFLLHSSSILFVS
NETSNVVISANVEGNRVEGLTNYVNTTYNNEPTRAGFSQNDSSVSAQFVNQSCVFWNFTI
DDWSTEGCCLVPDTDPPQCRCNHLTNFALLVIFNGFGEHTLKKACLFAFGVPAVIVALNA
GIIDATKPVSVASSVCEEGIDRATSSPFAESFLAENMCWIKGYSLYFSFLLPVGVILLYN
IVVFVLVIKSITAKRVRNP
Nucleotide sequence
Length: 4,020
>Phmamm.CG.MTP2014.S1110.g13711.01.t
ATGACTTGCGTAGGCATACCTGGACGTGTGGCAACACCGACGTTTGCAACTACCAGTAAT
TCAATCACAGCAACTTGGTCTCCGCCGACCTCTCCCAACGGAATGATCACTGCTTACAGA
GTTTCCTGGACGCCAGTGACAGGTGATGGAACGTCTGGTAATCTAACAGCATCCACCACT
TCGTACACCATCCCACGATTAACGCCTTATACTGAATATAGTATCACTGTTTTTGCTCAG
ACCGCTGTTGGGGAAAACGCTGGAACCGTCGCTTCCCAGCGAACCGATGAAGACGTTCCT
CTTGAAGCTGTAAGGAATGTTGTTCTCACACCAAGTACTACGGGAGTTGTAGTAAGCTAC
GATCCACCGGCTGTGGTCACTGGGATTTTTATATTCCTGTTGGAATATCGGCTAACCTCA
AATCCTTCAGACTCATTTCGTGCAAGTACCAGCCCCACTGCAATATCTGCTCTGGACGCT
TTTACCTCTTACACAATTAGGATTACTGTAAGCACTGGTGCGGGTGTCGGACCAAGTGTA
ACCAGAACTTTCACTACCGATCAAGGAATTCCAGGCGAAATAACAAATCCGATTAGTTTG
GCTTTCACAACTACAACTGCAACCGTACAATGGGAAGCGCCTTTAACCCCCAACGGAATT
ATCACTGAATATAAGATTTTTTGGACAGAGGATGGAGTTGACATGGAGGATACTGTGGCT
GCTTCCTTTACCACGTACGAAATCACGGGACTACAACCATTTACAACATACAGCGTGCAA
ATCGTAGCGAGCACTATTGCAGGGGACAGTAGTGGTGTTGTTGTGATGGCTACAACAGAT
GAAGACGTGCCTGATGCTCCAATCCTCGGTTTGTTTGTTAACGATGACAATTCTTTCGAC
ATAATAATTACACAAGCTTCTCGACCAAAAGGTCTCACACTTTACAACGAGATCAGAATA
AGGCAAAACATTTCACAATGTACTGTTCTTGCCGACACCGATTGTTATAACGTAACAGAA
ACGTTACCTGCTTCTCAAACAACGTTTACAACGGAGGTACTGCTCGGGTTTAGGTCTTTT
ATATTTTCTGTAAGAGCCAACACTTCCGCCGGATTTGGCCCTCCAGCCACAATCACAGCA
AGAACCAACACTGTCGCGGCCGGAATTGTTTCGAATGTAATTCTTACTCCATTCAACTCC
ACCGCAATTACAGTTTCATGGACCACGGCTAGACCAGTTCCCGGTCCCAGCAATTACACT
ATTACTGCAACCGATTTTTCGGGTGTAACAACCACTGTGACCGTAGTAGATCCAGATGGC
ACGGCTTTAGAATTGAACTCCAGTATCGCTGGACTCACACCAGGATCTCTTTATACGGTG
ACTGTCACCCAATTTACTGTTGTTGGCAGTGGTCCTACTTCGCCTATCTCAGTGCTAACA
AGAGCCGCCACGCCTGTTGCAGGAGCACAACCTAATGTTAGTGTTGCTCAAAACCTCCTT
GGTGCATCTGCTACTCAGGCATTTGCTATTGCGAATCCATGTAATAACGTGGGTACATTT
TTTTCACTTGCTTCCGGGACAATCCTGGGTGTGGATGTGATTATAAGGGAATCGGGCTCT
TCAAGCACAGAAATAAGCTACTGGGCTGAAGCATCTGTTCTGAATCCGACACCTCAATAC
TTTGCTGCTACGATTCAATGCATTCCAGCGTTGGGAAGAAAGAAGAGGAGAGTCTCTGAT
GATGAACAAACGTTTGTGTGTGGCCACGACCAAACCTGTGACATAGCGTTGGTTCGAAGT
CTTTGCAATGGACCACTCGCCCCAGGTCGATCGTACGAAGTTGCTTTTCGAGCCGACACC
GGAGCTCCCGAGGGAAAATCAGATCCAACCGATTTTTCGGCCCCTGTTACCACAGGAATA
GAAGGAACCACATCTTTACCAGGGACAGATGAGATTAATTCTACTCCTACCCCAACCTCC
GCAGCAGGATCAATATTGAATACAACAACCACAGTATCAACATCAACAACATTGCCTACA
CTTCAAACTACAACAAGAACTACAACGTCATCAACAACCTCAACTTCAACCACATTACCA
ACAACAACCACTGAAGAATCTACCACATCTACTTCTGCGCCAAACCAAGTGTTGCAGCCA
ATACCAGAAGCAAGACCAAACATTGAAGTCAGCCAAGAACTTCCCGGACGACTAAGGGAG
CAAGCATTTGCTGTGCAAAATCCCTGTCTTTCACTTGATCGTTTGTTTGGTGCAAATGAT
GGTGATGAAACGAACGTAGAAATAGTCGTTAAAGAAGAAGATGCGAATCCGGAAGGTGCG
GAAATAGGTGTTTGGGCAACATCTATTACACAGAACCCGATTGGTCTCTATGTTGCTGCA
TCCATGTCTTGCTCCTCATCGGCACGAAAACGAAGAAATCTCGATCCTGATGATGAACGC
TTTGTCGTTGGTCTGGACCAAACGTGCGTAAGAGATAGACGGGAGGTGTGCAACGGACCT
TTGCCCCCAGATCGTTCATTCCAGGTTGCGATTCGTTCAGGAAACGAATTTGAAAAATCC
GAACTTACAGAATTTTCTGATCCAATTTCTACTTTAGGTTGTGGTGGACAATGCAACGGC
GGTACTGTGTGCAGAAGCGTTTCATCCGAAAATGCAGAGCCAGAGTTGATGTGTGTTTGT
GAAGCATCCGAATGCACAGGTCAACCATTAGCGTCCATTCCCTGCATTGAAAATCGAACG
AGAGATGGATTTATTGTGGGGAACTTTGATGTCTCTTTATTGGTTGTGATTTCGTGTAGA
GATCTAACAATTCCAGACGTTGTACTAATGACCGACGTGGAAGTGATTACCGAAACTGAG
CTAGAGCAGGTGTTGGTAGAGCTTGACGTTAGAACGTCTGATGTCAACATCCTTAACGAA
GAAGACGTCAGCTCCACTGTAGATTTCATCCTATCTGTAGGTTCAACTTCACGAGATATG
ATGATTACACCATTTTCCTACCGAAGCGTGATCGCTATTGGTGACCATGTGAGCAATTTT
CAGATGTCCAATCGGAGCATAGGGTTTGTTAACCAGTCGGCTCTTATTGAATCACTGACT
TCTCTAGCATACCGTGTACCAATGCTTCCAAACGAGGACCCATTGGACGTTTTGACTCCA
ACCGTAGCAGCGAGGGTGCAGGATATAATGGAACTAAATATATCTGTAACATACCAACCC
GAGATTTACAACGCAAGTGGCCAGTTATTCTCACCGGCATCTATTGAAGTGCCACAAGAA
GCTGTTTTGCGTAGTCAACCCAATAATGACGCAGAAAGTGCTGTACAGTCTCGAACACCC
GGTTTTCAAGGGGCAAGAGTTGTATTCTTGCTTCATAGCTCGAGCATTCTTTTTGTTTCC
AACGAAACTTCAAATGTGGTCATTTCGGCCAACGTTGAAGGAAATCGCGTGGAGGGTCTC
ACGAATTACGTAAACACGACGTATAACAACGAACCTACAAGAGCAGGGTTTTCCCAGAAC
GACTCTTCAGTTAGCGCCCAGTTTGTCAATCAAAGTTGCGTGTTTTGGAATTTTACAATC
GATGATTGGTCAACTGAAGGTTGTTGTCTTGTACCAGATACAGATCCACCCCAATGTAGG
TGCAACCATCTGACGAACTTTGCACTTTTGGTGATTTTTAACGGATTTGGGGAACATACT
TTAAAAAAAGCTTGTTTGTTTGCTTTTGGTGTTCCCGCAGTCATTGTTGCATTGAACGCC
GGAATAATTGATGCCACCAAACCGGTATCAGTTGCTTCATCAGTATGTGAAGAGGGCATA
GATCGCGCTACGTCTTCCCCGTTTGCTGAATCGTTTCTTGCTGAAAACATGTGTTGGATC
AAAGGCTACTCACTTTATTTCTCGTTCCTTCTGCCGGTGGGAGTAATTCTACTTTACAAC
ATCGTGGTGTTTGTTTTGGTCATCAAATCGATCACTGCTAAAAGAGTAAGAAACCCTTAA
| SUPERFAMILY |
FN3_sf (IPR036116) - T[2-85] 3.77E-18 - T[108-284] 5.39E-31 - T[318-481] 2.09E-13 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[6-98] 20.26 - T[100-189] 9.484 - T[193-282] 18.84 - T[283-387] 7.993 - T[389-487] 13.665 |
| CDD |
FN3_dom (IPR003961) - T[7-85] 6.85745E-14 - T[102-186] 1.6878E-4 - T[191-270] 9.9966E-13 |
| SMART |
FN3_dom (IPR003961) - T[7-86] 1.2E-9 - T[101-177] 0.0029 - T[191-270] 2.1E-10 - T[387-471] 1.7 |
| Gene3D |
Ig-like_fold (IPR013783) - T[15-91] 1.0E-17 - T[92-192] 1.1E-9 - T[200-274] 4.8E-17 - T[275-387] 1.2E-5 - T[388-485] 5.8E-9 |
| Pfam |
FN3_dom (IPR003961) - T[17-85] 1.7E-14 - T[201-268] 5.8E-11 |
| SMART |
GPS (IPR000203) - T[1189-1236] 6.8E-8 |
| ProSiteProfiles |
GPS (IPR000203) - T[1190-1236] 13.756 |
| Pfam |
GPS (IPR000203) - T[1192-1230] 1.1E-11 |
| Pfam |
GPCR_2_secretin-like (IPR000832) - T[1229-1334] 1.5E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| USH2A_HUMAN | 25.376 % | 94 | 5.42E-19 |
| PTPRQ_HUMAN | 27.901 % | 114 | 2.51E-25 |
| PTPRF_HUMAN | 25.444 % | 96.3 | 7.41E-20 |