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TRANSCRIPT CARD

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  1. Clone 'csga070d18' > 
  2. Transcript 'KH2012:KH.C12.82.v1....' > 
  3. Transcript 'Phmamm.CG.MTP2014.S6...' > 
  4. Transcript 'Phmamm.CG.MTP2014.S6...' > 
  5. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1082.g13585.02.t

Possible name(s)

COL21A1; COL24A1; COL9A1

Gene model

Phmamm.CG.MTP2014.S1082.g13585

Location

S1082 [33,678 / 40,222]

Sequences

Amino acid sequence

Length: 408

>Phmamm.CG.MTP2014.S1082.g13585.02.p
EPTPSPECPICPAGPQGPPGETGAPGAKGDFGNPGLAGIPGIDGIDGESGPPGIQGLPGA
KGDRGPRGIDGFSGEPGDEGRTGPPGPPGPPGETSSGISGGKGQKGDRGERGLPGPPGYS
SDSSVILGSGSDESPSLPGYVGPRGPRGPPGFSGPKGHRGLKGDMGPDGKQGPKGDVGPP
GEEGTQGPGGETGPRGARGYPGEDGDKGDQGPSGVPGEMGRPGPPGEQGEEGIAGPSGER
GDRGPAGERGLPGNPGPPGVPGESGLPGINGNDGLPGIPGERGSPGPVGEKGAEGEQGRS
GEKGDRGEQGRDGIPGESGRPGEEGPPGLKGSQGSPGQQGVQGVPGEQGRPGNAGPSGES
GPPGPQGSKGDDGEAGIQGRVGERGLPGPKGHKVTFLQTCSAFYAMTS

Nucleotide sequence

Length: 1,788

>Phmamm.CG.MTP2014.S1082.g13585.02.t
GTGAACCTACACCATCACCGGAGTGTCCAATTTGCCCTGCTGGTCCCCAAGGACCCCCGG
GAGAAACTGGTGCACCAGGCGCAAAAGGTGATTTTGGTAATCCCGGTTTGGCTGGAATAC
CTGGAATAGATGGAATTGATGGCGAAAGTGGACCTCCAGGTATACAAGGCCTCCCTGGAG
CGAAAGGAGACCGAGGACCACGTGGAATAGATGGATTTTCAGGGGAACCTGGTGATGAGG
GTCGAACAGGACCACCAGGACCACCAGGGCCACCGGGAGAAACCTCTTCTGGGATTTCCG
GCGGTAAGGGACAAAAAGGAGATCGGGGTGAACGCGGATTGCCTGGTCCACCAGGATATT
CGTCTGATAGTTCAGTTATTCTGGGATCCGGCAGTGATGAATCTCCTAGTCTTCCGGGTT
ACGTAGGACCACGGGGTCCACGCGGTCCTCCCGGCTTCAGCGGACCTAAGGGACACCGTG
GATTGAAAGGAGATATGGGTCCGGATGGCAAACAAGGACCGAAGGGCGACGTCGGGCCAC
CAGGAGAAGAAGGAACCCAAGGACCAGGAGGAGAAACAGGTCCACGCGGTGCTAGAGGTT
ATCCAGGGGAAGACGGTGATAAAGGTGATCAGGGTCCTTCAGGTGTTCCAGGCGAAATGG
GAAGACCAGGACCGCCGGGAGAACAGGGTGAAGAGGGTATCGCAGGCCCCTCGGGGGAGA
GAGGAGACAGAGGACCTGCTGGAGAACGTGGTTTACCAGGAAATCCGGGACCCCCAGGTG
TTCCAGGAGAGTCTGGTTTGCCGGGAATCAATGGAAATGATGGTCTGCCTGGAATTCCTG
GCGAGAGAGGATCACCAGGACCGGTGGGGGAAAAGGGCGCTGAAGGAGAACAAGGAAGAA
GTGGGGAAAAGGGGGATCGCGGAGAGCAAGGCAGAGATGGAATACCAGGTGAGTCTGGAC
GTCCTGGCGAAGAAGGTCCACCTGGACTGAAAGGTTCACAGGGATCACCTGGCCAGCAAG
GTGTTCAAGGCGTGCCTGGGGAACAAGGACGCCCGGGCAACGCAGGACCGTCCGGTGAAT
CTGGGCCACCAGGACCACAGGGCAGTAAGGGTGACGATGGAGAAGCCGGAATTCAGGGCC
GAGTAGGCGAAAGGGGTTTGCCTGGACCGAAAGGACACAAGGTAACTTTTTTGCAAACAT
GTAGTGCATTTTACGCAATGACGAGTTGATATTGTTATATTTAGGGTGCATCGGGAACAA
CGGGAGAAAAAGGAGAGCCCGGAGATAGTGGGCCAGAGGGACCACATGGACCACCGGGAG
AAAAAGGCGAAGGAGGAATTCCTGGAGAACGTGGATCGCCTGGTACACCTGGAGAACACG
GACAACGAGGACCATCTGGTCCACCTGGTCCAGTTGGTTCCGAAGGACCGAGGGGCCCCG
TGGGACCGAGGGGTCATCACGGCGAAAGAGGACCACGAGGCAGAATGGGATTGCAGGGAC
CACCGGGACAAATGCCGAGCGATCAAAAAATTCTGGAACTGGTTCGAAGAGTTTTGAGAG
CTGAAGCCCGCTCACTGACCGTCAGGCCGCGCGGATTCGCAGCGCCAGGACCACCAGGTC
AACCGGGTCAACCAGGAGAAGATGGGGAGCCCGGTTCTCCGGGAGAACCAGGAATGAACG
GAAATCCGGGATTGAGAGGAATGGAAGGACCAATGGGTGCCCCTGGACCAAGAGGACTGA
AAGGAACAGGCGGTGATAAGGGTGACAGAGGAAAAACGGGAGTGGGTG

InterProScan

Pfam
Collagen (IPR008160) - T[14-71] 1.3E-9 - T[139-192] 6.1E-8 - T[178-236] 2.9E-7

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
COOA1_HUMAN 44.55 % 159 1.49E-42
CO4A2_HUMAN 38.78 % 138 2.42E-35
CO4A1_HUMAN 42.784 % 140 5.12E-36