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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S7...' > 
  2. Transcript 'Phmamm.CG.MTP2014.S1...' > 
  3. Transcript 'Phmamm.CG.MTP2014.S1...' > 
  4. Transcript 'Phmamm.CG.MTP2014.S2...' > 
  5. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1082.g13585.01.t

Possible name(s)

COL21A1; COL24A1; COL9A1

Gene model

Phmamm.CG.MTP2014.S1082.g13585

Location

S1082 [30,972 / 41,506]

Sequences

Amino acid sequence

Length: 786

>Phmamm.CG.MTP2014.S1082.g13585.01.p
MCQPGEIGICGNIFVTFFNDSVFFCRQVYPMGLPAEYSFVSTFRMIGNTRKKQWDLWLVD
DGQGSEEIGIKLDGENLLVEFHAKGVDGYIQKASFTAVDGLFDNEWHKLLMSVENDHVSL
FVDCVWVDTLPFTARAPVPTEGETHVGRLSQFQRTSASIELQWMLIHCDPTRAQRESCGE
LPARVAKSAGTLCPICPAGPQGPPGETGAPGAKGDFGNPGLAGIPGIDGIDGESGPPGIQ
GLPGAKGDRGPRGIDGFSGEPGDEGRTGPPGPPGPPGETSSGISGGKGQKGDRGERGLPG
PPGYSSDSSVILGSGSDESPSLPGYVGPRGPRGPPGFSGPKGHRGLKGDMGPDGKQGPKG
DVGPPGEEGTQGPGGETGPRGARGYPGEDGDKGDQGPSGVPGEMGRPGPPGEQGEEGIAG
PSGERGDRGPAGERGLPGNPGPPGVPGESGLPGINGNDGLPGIPGERGSPGPVGEKGAEG
EQGRSGEKGDRGEQGRDGIPGESGRPGEEGPPGLKGSQGSPGQQGVQGVPGEQGRPGNAG
PSGESGPPGPQGSKGDDGEAGIQGRVGERGLPGPKGHKGASGTTGEKGEPGDSGPEGPHG
PPGEKGEGGIPGERGSPGTPGEHGQRGPSGPPGPVGSEGPRGPVGPRGHHGERGPRGRMG
LQGPPGQMPSDQKILELVRRVLRAEARSLTVRPRGFAAPGPPGQPGQPGEDGEPGSPGEP
GMNGNPGLRGMEGPMGAPGPRGLKGTGGDKGDRGKTGVGVAGPPGSPGPRGLDGAPGIGK
DGRDGE

Nucleotide sequence

Length: 2,617

>Phmamm.CG.MTP2014.S1082.g13585.01.t
GCTCTGTCATGCCAAGTTGGCAAGTGAAAGCAATGAATTTTTATCTTACAGTGACACTCT
TGACATCATGCTTAACAAGTTGTATATCAATTGACGTGGTATGTCCTCAAATACAAGTGG
GAGAAGATGATCTTCCAGGGTTTGATGTCATATCACAATTCAGCTTAGACAGGGATAATT
TGGTTGGTGGTTTGCAAAAAGTAAATGGATCTTCCGAGTATCAAATTGCGTACAAGTTGT
TAAAAGACGTTTCTATTCATGTGCCAACCAGGTGAAATAGGTATTTGTGGTAACATATTT
GTAACGTTTTTTAACGATTCGGTATTTTTTTGCAGACAAGTGTATCCAATGGGTCTCCCC
GCCGAATATTCCTTCGTAAGCACTTTTCGGATGATTGGAAATACACGCAAAAAGCAGTGG
GATCTTTGGCTGGTTGATGATGGGCAAGGTTCGGAGGAAATAGGAATCAAACTTGACGGA
GAAAATTTACTAGTGGAATTTCATGCTAAGGGTGTGGATGGATATATACAAAAAGCTTCG
TTTACTGCGGTGGATGGCTTATTTGACAACGAATGGCACAAGCTGCTTATGTCTGTCGAA
AACGACCACGTTTCTCTTTTTGTTGATTGTGTATGGGTTGATACACTTCCTTTTACCGCA
AGAGCTCCGGTCCCAACAGAAGGTGAAACTCACGTGGGAAGGTTGAGTCAGTTTCAAAGA
ACGTCGGCCTCTATTGAACTACAATGGATGTTGATTCATTGTGACCCAACGAGAGCACAA
AGAGAATCTTGTGGTGAACTACCAGCTCGGGTTGCAAAGTCAGCTGGAACTCTGTGTCCA
ATTTGCCCTGCTGGTCCCCAAGGACCCCCGGGAGAAACTGGTGCACCAGGCGCAAAAGGT
GATTTTGGTAATCCCGGTTTGGCTGGAATACCTGGAATAGATGGAATTGATGGCGAAAGT
GGACCTCCAGGTATACAAGGCCTCCCTGGAGCGAAAGGAGACCGAGGACCACGTGGAATA
GATGGATTTTCAGGGGAACCTGGTGATGAGGGTCGAACAGGACCACCAGGACCACCAGGG
CCACCGGGAGAAACCTCTTCTGGGATTTCCGGCGGTAAGGGACAAAAAGGAGATCGGGGT
GAACGCGGATTGCCTGGTCCACCAGGATATTCGTCTGATAGTTCAGTTATTCTGGGATCC
GGCAGTGATGAATCTCCTAGTCTTCCGGGTTACGTAGGACCACGGGGTCCACGCGGTCCT
CCCGGCTTCAGCGGACCTAAGGGACACCGTGGATTGAAAGGAGATATGGGTCCGGATGGC
AAACAAGGACCGAAGGGCGACGTCGGGCCACCAGGAGAAGAAGGAACCCAAGGACCAGGA
GGAGAAACAGGTCCACGCGGTGCTAGAGGTTATCCAGGGGAAGACGGTGATAAAGGTGAT
CAGGGTCCTTCAGGTGTTCCAGGCGAAATGGGAAGACCAGGACCGCCGGGAGAACAGGGT
GAAGAGGGTATCGCAGGCCCCTCGGGGGAGAGAGGAGACAGAGGACCTGCTGGAGAACGT
GGTTTACCAGGAAATCCGGGACCCCCAGGTGTTCCAGGAGAGTCTGGTTTGCCGGGAATC
AATGGAAATGATGGTCTGCCTGGAATTCCTGGCGAGAGAGGATCACCAGGACCGGTGGGG
GAAAAGGGCGCTGAAGGAGAACAAGGAAGAAGTGGGGAAAAGGGGGATCGCGGAGAGCAA
GGCAGAGATGGAATACCAGGTGAGTCTGGACGTCCTGGCGAAGAAGGTCCACCTGGACTG
AAAGGTTCACAGGGATCACCTGGCCAGCAAGGTGTTCAAGGCGTGCCTGGGGAACAAGGA
CGCCCGGGCAACGCAGGACCGTCCGGTGAATCTGGGCCACCAGGACCACAGGGCAGTAAG
GGTGACGATGGAGAAGCCGGAATTCAGGGCCGAGTAGGCGAAAGGGGTTTGCCTGGACCG
AAAGGACACAAGGGTGCATCGGGAACAACGGGAGAAAAAGGAGAGCCCGGAGATAGTGGG
CCAGAGGGACCACATGGACCACCGGGAGAAAAAGGCGAAGGAGGAATTCCTGGAGAACGT
GGATCGCCTGGTACACCTGGAGAACACGGACAACGAGGACCATCTGGTCCACCTGGTCCA
GTTGGTTCCGAAGGACCGAGGGGCCCCGTGGGACCGAGGGGTCATCACGGCGAAAGAGGA
CCACGAGGCAGAATGGGATTGCAGGGACCACCGGGACAAATGCCGAGCGATCAAAAAATT
CTGGAACTGGTTCGAAGAGTTTTGAGAGCTGAAGCCCGCTCACTGACCGTCAGGCCGCGC
GGATTCGCAGCGCCAGGACCACCAGGTCAACCGGGTCAACCAGGAGAAGATGGGGAGCCC
GGTTCTCCGGGAGAACCAGGAATGAACGGAAATCCGGGATTGAGAGGAATGGAAGGACCA
ATGGGTGCCCCTGGACCAAGAGGACTGAAAGGAACAGGCGGTGATAAGGGTGACAGAGGA
AAAACGGGAGTGGGTGTAGCTGGTCCTCCAGGATCTCCAGGACCTCGAGGACTTGATGGG
GCACCTGGTATCGGAAAAGACGGTAGAGACGGCGAAC

InterProScan

SMART
Laminin_G (IPR001791) - T[11-170] 1.1E-17
SUPERFAMILY
ConA-like_dom_sf (IPR013320) - T[25-174] 3.28E-23
Pfam
Collagen (IPR008160) - T[199-256] 1.8E-9 - T[323-375] 1.8E-7 - T[468-517] 8.0E-7 - T[510-568] 3.2E-9 - T[564-622] 2.7E-8 - T[609-667] 1.4E-8 - T[700-756] 2.3E-8

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
COLA1_HUMAN 36.174 % 211 1.62E-57
COOA1_HUMAN 41.1 % 225 1.72E-61
CO9A1_HUMAN 41.758 % 357 3.92E-110