- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Cisavi.CG.ENS81.R193...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S1044.g13416.02.t
Possible name(s)
ALCAM; HMCN2; PXDN
Gene model
Location
S1044 [39,007 / 50,117]
Amino acid sequence
Length: 580
>Phmamm.CG.MTP2014.S1044.g13416.02.p
MLKNVSVYEGETATVPCDYVTSLDTSVPPIIRWHQLDGVDRKRLYIFKKGDENLTGRDAS
VSRDLQIGPNGELIIPNTTLADNALFNHLSCEVEFGVAGTAEDSLIFIVARKASVDPVTN
PDKTNFVMNGDYQIIGNCVSDFAYPEPILEFYKGNMKVERAPVQGFLSGFTEGKQSTKTP
DGLTIKVQDTLLVNLTGADDNAQYSCVVRSGINNEFVQNVSFPRIRVTCKDPTTSVVVTG
DKNPVKAGDTLTLTCAPNGNPDPIISDFGGQQTSEYQVKVSKTDDGQVVTCTAGNGLGQS
ITGSYTVSVAYLDSPTVTGSETVRKGSPINLQCDAMSNQQVNYMWSKDGADLNVNQATYS
LNDADFMDSGMYKCTATTAAGHEEHSSRQVTVNGIEFYGSDVKKSGDMAVLSCTFLSNPG
PKIVWMRVGSDVQMPGSNSSSNKDSFTSYLSVGPLDSSFKEAEYTCKASNEALPSQIAQE
TLNLKGIEVPEESSPPIAGIIIGILVALLVVAIILAVLYNKGIICKSDEKGDENAEDIAV
DINKDESPDDAESGRKPDNEEEKLMNGNDQVSFYSFANMS
Nucleotide sequence
Length: 1,845
>Phmamm.CG.MTP2014.S1044.g13416.02.t
ATGGATCGCGAAAGTAATGCGCGAACGTACCACGGTGCTGTTCCACTCCACAGCAGTCTG
CGCCAGATTAAACTCTGATGCCAAGCTGCTGATATTACTCTGATGCTGAAAAACGTTTCA
GTTTATGAAGGAGAGACTGCAACTGTGCCTTGTGACTATGTTACCTCGCTCGACACATCC
GTTCCTCCGATCATCAGGTGGCACCAGCTGGACGGAGTCGACAGGAAGAGACTTTACATT
TTCAAGAAAGGCGACGAGAATTTGACTGGACGTGATGCTTCGGTGTCACGTGATCTACAG
ATCGGACCCAACGGGGAATTGATCATTCCCAACACTACCTTAGCAGACAACGCACTCTTC
AACCATCTGAGTTGCGAAGTTGAGTTCGGAGTTGCAGGGACCGCTGAAGATTCGCTCATT
TTCATAGTTGCGAGAAAGGCCTCAGTTGATCCAGTCACGAATCCAGACAAGACGAATTTC
GTGATGAACGGCGATTATCAGATTATTGGAAATTGTGTCAGCGATTTTGCCTATCCGGAA
CCAATACTGGAGTTCTATAAAGGAAATATGAAAGTTGAACGTGCTCCGGTCCAAGGTTTT
CTTTCCGGGTTTACTGAAGGAAAACAAAGCACCAAAACACCTGACGGGTTGACCATTAAA
GTTCAGGATACACTGTTGGTTAATCTCACAGGGGCGGATGACAACGCACAGTATTCTTGC
GTGGTGAGGAGTGGAATCAATAACGAATTTGTCCAGAACGTTTCTTTCCCACGAATCCGA
GTCACTTGTAAGGATCCCACCACATCGGTGGTTGTCACGGGAGACAAGAATCCAGTCAAA
GCCGGAGACACACTCACTCTGACGTGTGCACCAAACGGGAATCCCGATCCCATCATTTCC
GACTTCGGTGGTCAGCAAACTTCAGAATATCAGGTAAAAGTGTCGAAGACAGATGATGGG
CAAGTTGTAACGTGCACAGCTGGAAACGGACTTGGCCAGTCGATTACTGGATCCTACACA
GTTTCAGTAGCTTATCTGGATTCTCCAACTGTCACTGGAAGTGAAACTGTAAGGAAAGGA
TCCCCCATAAACCTTCAGTGCGATGCGATGTCCAACCAACAGGTCAACTACATGTGGAGC
AAGGACGGTGCCGATTTAAATGTCAACCAAGCCACCTATTCATTGAACGACGCTGACTTC
ATGGACAGTGGGATGTACAAGTGCACAGCAACCACCGCAGCCGGACACGAAGAGCATTCG
AGCAGACAAGTTACTGTAAATGGAATCGAATTTTACGGCAGTGATGTAAAGAAGTCGGGT
GACATGGCTGTGCTCAGTTGCACTTTCCTCTCAAATCCCGGACCGAAGATTGTTTGGATG
CGGGTCGGATCAGATGTACAAATGCCGGGATCAAACTCTTCAAGTAACAAGGACAGTTTC
ACAAGCTATTTGTCTGTGGGACCTCTGGACAGCTCCTTCAAAGAAGCTGAGTACACGTGC
AAAGCCAGTAATGAAGCTCTTCCTTCGCAAATCGCTCAGGAAACTCTTAACTTGAAAGGC
ATCGAAGTCCCAGAAGAATCGTCGCCACCAATTGCGGGAATTATTATCGGGATTCTGGTG
GCTTTGTTGGTCGTTGCAATAATTTTGGCTGTTCTTTACAACAAAGGAATTATTTGCAAA
AGCGATGAGAAAGGTGATGAGAACGCTGAAGATATCGCCGTCGACATCAATAAAGACGAA
TCGCCGGACGATGCTGAATCAGGTCGCAAACCGGACAACGAGGAGGAGAAACTGATGAAC
GGAAATGACCAGGTGAGTTTTTATTCGTTTGCCAACATGTCGTAA
| Gene3D |
Ig-like_fold (IPR013783) - T[1-110] 8.5E-8 - T[117-227] 1.0E-7 - T[238-310] 3.0E-6 - T[316-396] 1.1E-13 - T[402-485] 7.6E-9 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[2-86] 4.62E-6 - T[240-309] 1.65E-5 - T[319-393] 1.21E-11 - T[403-477] 4.89E-10 |
| SMART |
Ig_sub (IPR003599) - T[2-110] 0.74 - T[240-310] 5.4 - T[318-393] 6.7E-6 - T[398-483] 3.7 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[232-308] 6.724 - T[315-391] 12.023 - T[406-483] 9.537 |
| Pfam |
Ig-like_dom (IPR007110) - T[321-392] 4.0E-11 |
| SMART |
Ig_sub2 (IPR003598) - T[324-381] 3.4E-6 - T[404-473] 0.048 |
| Protein Name | Identity | Bit Score | e-value |
|---|