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TRANSCRIPT CARD

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  1. Clone 'cits038g18' > 
  2. Clone 'cigd046k24' > 
  3. Clone 'ESIUIA208ETDEL' > 
  4. Clone 'cign001o16' > 
  5. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1044.g13416.01.t

Possible name(s)

ALCAM; HMCN2; PXDN

Gene model

Phmamm.CG.MTP2014.S1044.g13416

Location

S1044 [38,550 / 50,540]

Sequences

Amino acid sequence

Length: 602

>Phmamm.CG.MTP2014.S1044.g13416.01.p
MIGRFLIVAAICVIGCQAADITLMLKNVSVYEGETATVPCDYVTSLDTSVPPIIRWHQLD
GVDRKRLYIFKKGDENLTGRDASVSRDLQIGPNGELIIPNTTLADNALFNHLSCEVEFGV
AGTAEDSLIFIVARKASVDPVTNPDKTNFVMNGDYQIIGNCVSDFAYPEPILEFYKGTKL
LQTTSENGNMKVERAPVQGFLSGFTEGKQSTKTPDGLTIKVQDTLLVNLTGADDNAQYSC
VVRSGINNEFVQNVSFPRIRVTYPTTSVVVTGDKNPVKAGDTLTLTCAPNGNPDPIISDF
GGQQTSEYQVKVSKTDDGQVVTCTAGNGLGQSITGSYTVSVAYLDSPTVTGSETVRKGSP
INLQCDAMSNQQVNYMWSKDGADLNVNQATYSLNDADFMDSGMYKCTATTAAGHEEHSSR
QVTVNGIEFYGSDVKKSGDMAVLSCTFLSNPGPKIVWMRVGSDVQMPGSNSSSNKDSFTS
YLSVGPLDSSFKEAEYTCKASNEALPSQIAQETLNLKGIEVPEESSPPIAGIIIGILVAL
LVVAIILAVLYNKGIICKSDEKGDENAEDIAVDINKDESPDDAESGRKPDNEEEKLMNGN
DQ

Nucleotide sequence

Length: 1,884

>Phmamm.CG.MTP2014.S1044.g13416.01.t
TCATGATTGGAAGATTTTTGATCGTTGCTGCTATTTGCGTCATCGGATGCCAAGCTGCTG
ATATTACTCTGATGCTGAAAAACGTTTCAGTTTATGAAGGAGAGACTGCAACTGTGCCTT
GTGACTATGTTACCTCGCTCGACACATCCGTTCCTCCGATCATCAGGTGGCACCAGCTGG
ACGGAGTCGACAGGAAGAGACTTTACATTTTCAAGAAAGGCGACGAGAATTTGACTGGAC
GTGATGCTTCGGTGTCACGTGATCTACAGATCGGACCCAACGGGGAATTGATCATTCCCA
ACACTACCTTAGCAGACAACGCACTCTTCAACCATCTGAGTTGCGAAGTTGAGTTCGGAG
TTGCAGGGACCGCTGAAGATTCGCTCATTTTCATAGTTGCGAGAAAGGCCTCAGTTGATC
CAGTCACGAATCCAGACAAGACGAATTTCGTGATGAACGGCGATTATCAGATTATTGGAA
ATTGTGTCAGCGATTTTGCCTATCCGGAACCAATACTGGAGTTCTATAAAGGAACCAAAC
TTCTGCAAACAACCAGCGAAAACGGAAATATGAAAGTTGAACGTGCTCCGGTCCAAGGTT
TTCTTTCCGGGTTTACTGAAGGAAAACAAAGCACCAAAACACCTGACGGGTTGACCATTA
AAGTTCAGGATACACTGTTGGTTAATCTCACAGGGGCGGATGACAACGCACAGTATTCTT
GCGTGGTGAGGAGTGGAATCAATAACGAATTTGTCCAGAACGTTTCTTTCCCACGAATCC
GAGTCACTTATCCCACCACATCGGTGGTTGTCACGGGAGACAAGAATCCAGTCAAAGCCG
GAGACACACTCACTCTGACGTGTGCACCAAACGGGAATCCCGATCCCATCATTTCCGACT
TCGGTGGTCAGCAAACTTCAGAATATCAGGTAAAAGTGTCGAAGACAGATGATGGGCAAG
TTGTAACGTGCACAGCTGGAAACGGACTTGGCCAGTCGATTACTGGATCCTACACAGTTT
CAGTAGCTTATCTGGATTCTCCAACTGTCACTGGAAGTGAAACTGTAAGGAAAGGATCCC
CCATAAACCTTCAGTGCGATGCGATGTCCAACCAACAGGTCAACTACATGTGGAGCAAGG
ACGGTGCCGATTTAAATGTCAACCAAGCCACCTATTCATTGAACGACGCTGACTTCATGG
ACAGTGGGATGTACAAGTGCACAGCAACCACCGCAGCCGGACACGAAGAGCATTCGAGCA
GACAAGTTACTGTAAATGGAATCGAATTTTACGGCAGTGATGTAAAGAAGTCGGGTGACA
TGGCTGTGCTCAGTTGCACTTTCCTCTCAAATCCCGGACCGAAGATTGTTTGGATGCGGG
TCGGATCAGATGTACAAATGCCGGGATCAAACTCTTCAAGTAACAAGGACAGTTTCACAA
GCTATTTGTCTGTGGGACCTCTGGACAGCTCCTTCAAAGAAGCTGAGTACACGTGCAAAG
CCAGTAATGAAGCTCTTCCTTCGCAAATCGCTCAGGAAACTCTTAACTTGAAAGGCATCG
AAGTCCCAGAAGAATCGTCGCCACCAATTGCGGGAATTATTATCGGGATTCTGGTGGCTT
TGTTGGTCGTTGCAATAATTTTGGCTGTTCTTTACAACAAAGGAATTATTTGCAAAAGCG
ATGAGAAAGGTGATGAGAACGCTGAAGATATCGCCGTCGACATCAATAAAGACGAATCGC
CGGACGATGCTGAATCAGGTCGCAAACCGGACAACGAGGAGGAGAAACTGATGAACGGAA
ATGACCAGTGAATGGAATTGGAACAACTGAATGTAAAAAGGCGGGAACCGATTTAGCGAG
CAAAACCCATTCTTCCCTCCACGT

InterProScan

SUPERFAMILY
Ig-like_dom_sf (IPR036179) - T[20-131] 7.5E-7 - T[262-341] 9.52E-6 - T[351-425] 1.27E-11 - T[435-509] 5.19E-10
Gene3D
Ig-like_fold (IPR013783) - T[23-133] 8.5E-8 - T[140-264] 2.5E-8 - T[270-342] 3.2E-6 - T[348-428] 1.1E-13 - T[434-517] 8.1E-9
SMART
Ig_sub (IPR003599) - T[25-133] 0.74 - T[272-342] 5.4 - T[350-425] 6.7E-6 - T[430-515] 3.7
ProSiteProfiles
Ig-like_dom (IPR007110) - T[264-340] 6.724 - T[347-423] 12.023 - T[438-515] 9.537
Pfam
Ig-like_dom (IPR007110) - T[353-424] 4.2E-11
SMART
Ig_sub2 (IPR003598) - T[356-413] 3.4E-6 - T[436-505] 0.048

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value