Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S102.g03223.01.t

Possible name(s)

ACTG1; ACTR1A; ACTR1B

Gene model

Phmamm.CG.MTP2014.S102.g03223

Location

S102 [196,533 / 200,958]

Sequences

Amino acid sequence

Length: 250

>Phmamm.CG.MTP2014.S102.g03223.01.p
MDSYDIIVNQPVVIDNGSGMIKAGFAGDQVPKCYFPNYIGRPKHVRVMAGALEGDIFIGP
KAQEHRGLLSIRYPMEHGIVTDWNDMERIWQYVYSKNELQTFPEEHPVLLTEAPLNPRRN
RERAAEIFFETFNVPAFFVSIQAVLSLYAAGKMTGVVIDAGDGVTHSVPIYEGFSLPHSI
IRTDVAGRDVTKYLQLLLRKEGFNFKTTAEHEIVKTIKEKACYLSQNAVKEEGVEHEKKL
FPLPDGSSIE

Nucleotide sequence

Length: 812

>Phmamm.CG.MTP2014.S102.g03223.01.t
GGCAGAGTTGGCATAGGTTTGGTTTACTGATTTAAAAAAGGTTTGAAATCGTCTGTGGAG
CATGGATTCTTATGACATTATCGTAAATCAGCCAGTGGTCATTGATAATGGCTCTGGAAT
GATAAAAGCTGGATTTGCTGGAGATCAAGTTCCAAAATGCTATTTTCCCAATTATATTGG
TCGACCAAAGCATGTGAGAGTCATGGCCGGGGCACTTGAGGGCGACATATTCATAGGTCC
AAAGGCACAGGAACATAGAGGTCTCTTGAGTATTAGATATCCAATGGAGCATGGAATTGT
AACAGACTGGAATGATATGGAAAGGATTTGGCAATATGTCTATTCCAAAAATGAGCTTCA
AACATTTCCTGAGGAGCATCCAGTGTTATTGACCGAGGCACCACTAAATCCACGTAGAAA
TCGTGAAAGGGCTGCTGAAATATTCTTCGAAACTTTTAACGTCCCTGCCTTTTTTGTGTC
AATTCAAGCTGTGTTGTCACTATATGCAGCTGGTAAAATGACTGGAGTAGTTATCGATGC
AGGTGATGGAGTCACTCATTCTGTTCCAATCTATGAGGGATTTTCTCTGCCACATTCCAT
AATAAGAACTGATGTAGCGGGGCGCGATGTAACCAAATATCTACAATTGCTTCTGAGAAA
AGAAGGATTTAATTTTAAAACCACAGCTGAACATGAAATTGTAAAAACAATTAAAGAAAA
AGCATGTTACCTTTCTCAAAATGCTGTAAAAGAAGAAGGTGTAGAACATGAGAAAAAATT
GTTTCCTTTACCTGATGGAAGTTCAATAGAGG

InterProScan

PANTHER	Arp1 (IPR029909) - T[1-250] 9.1E-142
PANTHER	Actin (IPR004000) - T[1-250] 9.1E-142
SMART	Actin (IPR004000) - T[9-249] 1.6E-66
Pfam	Actin (IPR004000) - T[10-249] 8.3E-75
PRINTS	Actin (IPR004000) - T[30-39] 2.7E-31 - T[53-64] 2.7E-31 - T[65-87] 2.7E-31 - T[120-133] 2.7E-31 - T[145-164] 2.7E-31 - T[237-250] 2.7E-31
ProSitePatterns	Actin/actin-like_CS (IPR020902) - T[109-121] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
ACTG_HUMAN	57.025 %	303	4.56E-103
ACTY_HUMAN	76.4 %	425	5.16E-151
ACTZ_HUMAN	78 %	428	3.0E-152