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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S1018.g13291.01.t

Possible name(s)

CEP170B; SLC4A1AP; SNIP1

Location

S1018 [10,794 / 14,790]

Sequences

Amino acid sequence

Length: 351

>Phmamm.CG.MTP2014.S1018.g13291.01.p
MPKSDKHRNRKRSSSESSDRSPSPVKKKKKRSRSKDEIRKKHNKHDKQRNRSPESGRDSS
PEIPRHKKHRPKSPELKSKWERSPDNEKVRVKKEPSYRHHSPERSRYTHDRRIKREEDFD
RRQEELRSRRNRHERPGGRGRDQHQRDRRMNDERRLEERQRRDESGQTEEAFENKDEEPV
EKEKPNLGLSGALTEDKNSFRGVVIKYREPPEARVPKKKWRLYPFKGTESLKVLHLHRQS
AYLIGRLRRIADIPVDHPSCSKQHAVFQFRMVEQEVDGVLRRRVKPYIIDLGASNGTFVN
NEQIEPQRYVELKEQDVLKFGFSSREYVLLHAKSDTADVGSESEEEVEEES

Nucleotide sequence

Length: 1,056

>Phmamm.CG.MTP2014.S1018.g13291.01.t
ATGCCAAAATCTGATAAACATAGAAATCGTAAGCGCAGCTCGTCCGAATCTTCAGATCGT
TCACCTTCTCCTGTGAAGAAGAAAAAGAAAAGAAGTAGAAGCAAAGATGAAATAAGGAAA
AAACACAACAAGCATGATAAACAAAGAAATCGTAGCCCAGAATCCGGTAGAGACTCTAGC
CCAGAGATTCCGAGGCACAAAAAGCATCGACCGAAATCTCCTGAACTGAAATCAAAATGG
GAGCGCTCTCCTGACAACGAGAAAGTTCGTGTTAAGAAAGAACCTTCTTATCGACACCAT
TCCCCTGAAAGATCACGATACACACATGATAGGAGAATAAAAAGAGAGGAAGATTTTGAT
CGACGTCAGGAGGAATTACGAAGTAGAAGAAATCGTCATGAACGCCCAGGAGGGAGGGGT
AGAGATCAGCATCAGCGTGACAGAAGAATGAATGATGAACGGAGATTAGAAGAAAGACAG
AGAAGAGATGAAAGTGGACAAACTGAAGAAGCATTTGAAAACAAAGATGAGGAACCAGTA
GAAAAAGAGAAACCAAACTTAGGACTCTCTGGTGCCCTCACTGAAGACAAAAACAGTTTC
CGAGGAGTCGTTATTAAATATCGTGAGCCACCTGAAGCAAGGGTGCCTAAGAAAAAGTGG
AGACTTTATCCATTTAAGGGCACTGAATCATTGAAGGTTCTTCACTTGCATCGACAAAGT
GCCTATTTGATTGGCCGCTTGCGTCGCATAGCAGACATTCCTGTTGACCACCCTTCATGT
TCTAAACAACATGCTGTTTTTCAGTTCAGAATGGTTGAACAAGAAGTAGACGGTGTTTTG
CGACGCAGAGTGAAACCATACATCATCGATTTAGGAGCTTCTAATGGCACGTTTGTCAAT
AACGAACAAATTGAGCCTCAAAGGTACGTTGAACTCAAAGAACAAGACGTACTTAAATTT
GGGTTCAGTTCCCGGGAGTATGTCTTGCTTCATGCTAAAAGTGACACGGCAGATGTTGGC
AGTGAAAGTGAAGAAGAGGTGGAGGAAGAAAGTTAA

InterProScan

SUPERFAMILY
SMAD_FHA_dom_sf (IPR008984) - T[200-329] 3.06E-25
CDD
FHA_dom (IPR000253) - T[219-321] 1.2153E-24
SMART
FHA_dom (IPR000253) - T[241-304] 8.0E-12
Pfam
FHA_dom (IPR000253) - T[242-321] 1.7E-17
ProSiteProfiles
FHA_dom (IPR000253) - T[242-304] 10.908

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SNIP1_HUMAN 55.556 % 289 1.18E-95