- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S100.g03183.01.t
Possible name(s)
LRRC15; LRRC70; LRRTM2
Gene model
Location
S100 [163,902 / 166,964]
Amino acid sequence
Length: 462
>Phmamm.CG.MTP2014.S100.g03183.01.p
MSVNSALQPCQRNFANTQCHLGCYLDYRTMDLWCDETDFTVIPNPADIVAYAPPERSLSL
FFNSSCLTTITKDALEEYTCLIVFDASNNLLTKTEPSAFESCPKLEIIILSNNYITHIHQ
DSFKGLPNLEVIELNHNKLSEIHHSVFQNLPALETLILDRNLIKHLTAKLFAGVPKLRTL
SLKHNHLREWPRTKNEVLKQLKVLELGHNRISRIAYYSFEGMESLKKLTLHDNKLLTIDA
RSFKHSPLLEHIDLRHNRLHSLDSKLFSTLRNLRNLHLGGNRLVTPHKEWFFNVMLNYKV
DTNQSIAFGMQENPWKCDCNALDYLEFLQTTHSNKSHVQEMIAELEVKCISPINFTNKYL
TEITDLEIAIANKCNATHQVDSAQTVSYSFLPQDNQLKARTLMHVEVQKKTGSQKYPPVV
WFSIPVVILLLLIAGAFISWLAKNYKTRTSNWTSMNTVITKV
Nucleotide sequence
Length: 1,389
>Phmamm.CG.MTP2014.S100.g03183.01.t
ATGAGTGTTAACAGTGCGCTACAACCATGTCAGCGAAATTTTGCAAACACTCAATGCCAC
TTAGGGTGCTACCTTGATTACCGGACCATGGACTTATGGTGCGATGAGACAGACTTTACA
GTGATTCCAAATCCTGCTGACATTGTAGCTTACGCTCCACCAGAAAGGTCACTGTCCTTG
TTTTTCAACTCATCCTGTCTGACCACAATTACCAAAGATGCTTTGGAGGAGTACACATGT
CTTATCGTTTTTGATGCATCGAACAACCTTTTAACTAAAACTGAACCATCGGCATTTGAA
TCCTGCCCCAAACTTGAGATAATAATCCTTTCCAACAACTACATTACTCATATTCACCAA
GACTCTTTTAAAGGTCTTCCAAACCTCGAAGTCATCGAACTCAATCATAACAAGTTGTCA
GAAATCCACCATAGCGTTTTCCAAAACCTACCAGCATTGGAAACTTTAATATTAGACCGA
AACCTGATAAAGCATTTGACAGCAAAACTATTTGCCGGTGTTCCGAAACTTCGTACTCTT
TCTCTAAAACACAATCATCTGCGAGAATGGCCACGCACAAAAAATGAAGTTCTTAAGCAG
CTTAAGGTTTTGGAACTTGGCCACAACCGAATTTCAAGAATTGCCTATTACTCGTTTGAA
GGAATGGAATCTTTAAAAAAATTGACCCTTCACGATAACAAACTTCTGACGATCGACGCA
AGAAGTTTTAAACACTCTCCATTGCTCGAGCACATCGACTTACGACACAACAGACTGCAC
TCGTTGGATTCAAAGCTTTTTTCCACTTTGCGCAATCTTCGCAACCTACATTTGGGAGGA
AATAGATTGGTGACCCCGCATAAGGAATGGTTCTTCAATGTAATGCTGAATTACAAGGTG
GACACAAACCAATCAATAGCATTTGGAATGCAAGAAAATCCATGGAAATGTGACTGTAAC
GCATTGGATTATTTGGAATTTCTACAAACTACTCACAGCAATAAGAGTCACGTACAAGAA
ATGATCGCAGAGTTGGAAGTTAAATGCATCTCACCTATTAACTTCACAAACAAGTACCTC
ACCGAAATTACCGACTTGGAGATAGCTATTGCCAACAAGTGTAATGCCACACATCAAGTT
GATAGTGCACAAACCGTGTCTTACTCTTTCCTACCACAAGACAACCAGTTGAAGGCAAGA
ACCCTAATGCATGTCGAAGTGCAGAAAAAGACAGGTTCCCAAAAATATCCACCAGTGGTT
TGGTTTAGTATCCCAGTAGTTATTTTACTGCTACTGATCGCTGGAGCCTTTATATCCTGG
TTGGCAAAAAATTACAAAACACGGACCTCCAACTGGACAAGTATGAACACTGTGATTACC
AAGGTGTAA
| Gene3D |
LRR_dom_sf (IPR032675) - T[15-304] 1.4E-59 - T[305-381] 5.9E-6 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[80-101] 4.924 - T[104-125] 6.819 - T[128-149] 7.05 - T[152-173] 5.717 - T[176-197] 6.611 - T[200-221] 7.404 - T[224-245] 6.226 - T[248-269] 6.842 - T[272-293] 5.386 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[102-125] 8.2 - T[126-149] 5.0E-4 - T[150-173] 0.0052 - T[174-195] 34.0 - T[198-221] 0.13 - T[222-245] 1.8 - T[247-269] 32.0 - T[270-293] 15.0 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[127-187] 1.6E-15 - T[224-283] 2.3E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRC15_HUMAN | 27.439 % | 117 | 3.84E-28 |
| LRRT2_HUMAN | 29.562 % | 107 | 3.96E-25 |
| LRR70_HUMAN | 26.959 % | 115 | 2.11E-27 |
