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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C8.511.v1....' > 
  2. Transcript 'KH2012:KH.C14.408.v1...' > 
  3. Region 'REG00000412' > 
  4. Transcript 'Haaura.CG.MTP2014.S9...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S98.g02029.02.t

Possible name(s)

SDC1; SDC2; SDC4

Gene model

Haaura.CG.MTP2014.S98.g02029

Location

S98 [105,135 / 107,572]

Sequences

Amino acid sequence

Length: 215

>Haaura.CG.MTP2014.S98.g02029.02.p
MVSSRKFFILFFFLCLSSAAMSSAATEDKSFYFDGDSSGDGNHIGTEFPTDDEDIDEGSG
KPDLVTIDVPGSVIPVKSGPKKINEEPIEVEPIEKKLDGDDGTNEEVISEHGIVGSVAGA
GGMHFIAAIVVGGCIGLLFAVCVVMLLVYRMRKKDEGSYALEYGLDKKPQGAYEYTKGVD
SKEYFAAESMFLFSIVYERTPHSFSFTSIPLCFC*

Nucleotide sequence

Length: 645

>Haaura.CG.MTP2014.S98.g02029.02.t
ATGGTTTCCTCACGAAAGTTCTTCATACTTTTTTTTTTCTTATGTTTATCGTCTGCGGCC
ATGAGTTCCGCTGCCACCGAGGATAAGTCTTTTTATTTCGATGGTGACAGCTCAGGAGAC
GGGAATCACATCGGGACTGAGTTTCCTACAGATGATGAAGATATCGATGAAGGATCAGGT
AAACCTGATTTGGTGACTATAGATGTACCAGGGAGTGTTATTCCAGTTAAATCCGGACCA
AAAAAAATAAACGAAGAACCAATTGAAGTTGAGCCGATCGAGAAAAAGTTAGATGGAGAT
GATGGAACCAATGAAGAGGTCATTTCTGAACATGGAATAGTTGGAAGTGTCGCTGGGGCT
GGCGGCATGCATTTTATCGCAGCAATCGTCGTAGGTGGATGCATAGGTCTTCTGTTTGCG
GTGTGTGTCGTCATGCTCCTTGTCTATCGCATGCGGAAAAAAGACGAAGGAAGCTATGCT
CTCGAGTATGGTTTGGACAAGAAACCTCAAGGTGCATACGAATATACTAAAGGTGTCGAC
AGTAAGGAGTATTTCGCAGCAGAGAGTATGTTCTTATTTTCTATTGTATATGAAAGGACG
CCACATAGTTTCTCTTTTACTTCTATTCCGTTATGCTTTTGTTAA

InterProScan

PANTHER
Syndecan (IPR001050) - T[14-64] 3.0E-24 - T[125-186] 3.0E-24
Pfam
Syndecan/Neurexin_dom (IPR027789) - T[124-178] 6.0E-20
ProSitePatterns
Syndecan_CS (IPR030479) - T[149-159] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value