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TRANSCRIPT CARD

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  1. Clone 'cien54016' > 
  2. Transcript 'Haaura.CG.MTP2014.S9...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S92.g01921.02.t

Possible name(s)

LSM10; SNRPD1; SNRPD3

Gene model

Haaura.CG.MTP2014.S92.g01921

Location

S92 [109,208 / 109,574]

Sequences

Amino acid sequence

Length: 122

>Haaura.CG.MTP2014.S92.g01921.02.p
MKLARFLMKLSHETVTIELKNGTQVHGTITGVDICMNTHLKSVKMTVKNREPVSLESLSI
RGNNIRYYILPDSLPLDTLLVDEGPKPRGGAKGDRGRGRGRGRGRGRGGRGRGRGGPRGR
F*

Nucleotide sequence

Length: 366

>Haaura.CG.MTP2014.S92.g01921.02.t
ATGAAGCTTGCTAGATTTTTGATGAAACTCAGTCACGAGACGGTTACCATTGAATTGAAG
AATGGTACCCAGGTCCACGGGACCATTACGGGAGTTGACATTTGCATGAACACTCATCTG
AAATCAGTGAAAATGACGGTTAAGAACAGAGAACCGGTCAGCTTGGAATCTCTCAGCATT
CGTGGAAACAACATTCGCTATTATATTCTACCTGACAGTTTACCCCTGGACACGTTACTG
GTCGACGAAGGACCAAAACCCAGAGGTGGAGCGAAAGGTGACAGAGGTAGAGGGCGTGGA
AGAGGCAGAGGACGTGGGCGGGGAGGAAGGGGCCGTGGCAGAGGTGGACCCCGTGGTAGA
TTTTAA

InterProScan

PANTHER
LSm4/Sm_D1/D3 (IPR027141) - T[1-105] 6.6E-49
CDD
Sm_D1 (IPR034102) - T[2-86] 9.57421E-59
Pfam
LSM_dom_euk/arc (IPR001163) - T[5-69] 3.6E-19
SMART
LSM_dom_euk/arc (IPR001163) - T[5-70] 1.2E-17
SUPERFAMILY
LSM_dom_sf (IPR010920) - T[5-118] 3.89E-27

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SMD1_HUMAN 85.393 % 162 5.95E-53