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TRANSCRIPT CARD

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  1. Transcript 'Haaura.CG.MTP2014.S8...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S889.g07006.01.t

Possible name(s)

LRP1; LRP6

Location

S889 [19,183 / 21,569]

Sequences

Amino acid sequence

Length: 371

>Haaura.CG.MTP2014.S889.g07006.01.p
MFFIGHKGKTVTVTIDPASQYLYWSDKKSPSVNRAIMDGSRFSNIAKSYANSIIIDPHTG
NIVYSDNDADSIMVAKDDGSEGRTIVRPEPSTSNATSIRMITQDIIYKHLYWTDTFSKEG
EGKVMRCKMDGSGKEVVLDKLNWPHAITIDHKTNRLYVAEAKTAIIYELDLTELVAINST
SASQSKSTKYDVSRHLTRISPYIIDLKIHEGMAYVVDGKSSRLERFNLTEGPKSMAPYGP
AEFFRVTTVSVYSNALYNKYISNNIYRNKHRYFLAETSNNPCNNNNCRSLCVAMSDTEHK
CLCADGKKAYGPICIDHTGIGKTEILIVSNYTAPKYDRCPDDQDISLPTCSATVDFSWTP
PKWTDDKTSKI

Nucleotide sequence

Length: 1,113

>Haaura.CG.MTP2014.S889.g07006.01.t
ATGTTTTTTATAGGACACAAGGGAAAGACAGTAACAGTGACCATAGATCCAGCGTCCCAG
TATCTCTATTGGTCAGACAAGAAGAGTCCTTCCGTCAACCGTGCCATTATGGATGGCAGT
AGATTTTCTAACATCGCAAAATCATATGCTAACAGCATAATAATCGACCCTCACACTGGA
AACATAGTCTATTCGGACAACGATGCAGACAGCATAATGGTAGCCAAGGACGACGGGTCT
GAAGGCAGGACCATTGTGAGGCCGGAACCGAGTACAAGCAATGCTACTAGCATTAGAATG
ATCACTCAAGATATCATATACAAGCATTTGTACTGGACTGATACATTTTCGAAGGAGGGA
GAAGGCAAGGTTATGCGTTGTAAGATGGACGGTTCGGGTAAAGAAGTTGTACTGGATAAA
TTGAACTGGCCACACGCCATAACAATAGACCACAAAACAAACAGACTTTATGTTGCCGAA
GCTAAAACCGCTATCATTTACGAACTGGACCTAACGGAGCTCGTTGCAATCAACAGTACG
TCGGCAAGTCAGTCCAAGTCTACCAAATACGACGTGTCGCGGCATTTAACGAGAATCAGT
CCGTATATTATCGATTTGAAAATTCATGAAGGTATGGCTTACGTCGTTGATGGGAAGAGT
AGCAGGTTGGAAAGATTCAATTTGACTGAAGGACCTAAGTCAATGGCACCGTACGGACCA
GCAGAATTCTTTCGAGTTACTACGGTTTCTGTGTACAGCAATGCATTGTACAACAAATAT
ATAAGTAATAATATATATCGAAATAAACATCGCTATTTTCTTGCAGAAACAAGCAACAAT
CCATGCAATAACAACAACTGCAGATCACTGTGCGTAGCTATGTCAGATACGGAACATAAG
TGCTTGTGTGCCGATGGCAAAAAGGCGTACGGTCCCATCTGCATCGACCACACAGGAATA
GGTAAAACCGAAATACTTATTGTATCGAATTACACAGCGCCAAAGTACGATAGGTGTCCG
GACGATCAAGATATATCACTACCTACGTGTTCCGCTACAGTTGACTTTTCATGGACACCA
CCGAAATGGACTGACGACAAAACAAGTAAAATT

InterProScan

SMART
LDLR_classB_rpt (IPR000033) - T[1-42] 0.17 - T[43-82] 27.0 - T[83-134] 0.014 - T[136-174] 50.0
Gene3D
6-blade_b-propeller_TolB-like (IPR011042) - T[2-304] 7.9E-41
ProSiteProfiles
LDLR_classB_rpt (IPR000033) - T[20-40] 8.091 - T[60-102] 7.116 - T[108-153] 12.012 - T[359-371] 4.935

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LRP1_HUMAN 24.422 % 81.3 1.59E-16