Aniseed - Transcript Card

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S849.g06881.03.t

Possible name(s)

LOXL2; LOXL3; LOXL4

Gene model

Haaura.CG.MTP2014.S849.g06881

Location

S849 [5,152 / 8,705]

Sequences

Amino acid sequence

Length: 471

>Haaura.CG.MTP2014.S849.g06881.03.p
LQAETAMGNGYSITFIFVTFSLSALDLASAFTEVRLRAGVSNWDGRIEVKRNERWGTVCD
LGFDKTAADIVCRELGFAGAEELRLRSHYGAARGPIWVSNVKCNGNETHFSQCEYTSINI
NYNPQRYGNVNRQCSSNELAGVLCIKPTINQNDFDMIRFEPDKDEMSDSELVEMQVDGVW
YRICDISWDITDAIVACRQIGMYAAKMSLIPVVVGDFQTVVELDCAGYEDSIQRCPHVLR
DINCQNYAAVACSPDAPDISIEIPELERSITLISKENKKLTCAKEEGCVSTSALNIDLNS
TVGHRKLLTFSSYVQNFGTADFRPPTPKGSWHRHKCHKHYHSITDFATYELLQPDGVKVA
SGHKVSFCLQDSSCVHGYHKKYACSNRVKDGNQGISIGCSDHYGRYLDCQWIDVTDVSPG
IYKLKISSNPYKYVPELDYTNNIVVCDVEIGEHKGKGRNCVWGKFFKTESK

Nucleotide sequence

Length: 1,413

>Haaura.CG.MTP2014.S849.g06881.03.t
TTACAGGCGGAAACAGCAATGGGGAATGGTTATTCAATCACATTCATCTTTGTCACGTTC
TCTCTGTCTGCACTTGATTTGGCTTCAGCATTTACAGAAGTGAGACTTCGGGCAGGTGTC
AGCAATTGGGATGGAAGAATTGAAGTGAAAAGGAACGAAAGATGGGGAACTGTTTGCGAT
CTCGGATTCGATAAGACTGCGGCAGATATCGTTTGTAGAGAACTTGGATTCGCAGGAGCT
GAAGAGCTGCGTTTGAGATCACATTATGGCGCTGCTCGTGGACCAATATGGGTTAGCAAC
GTTAAGTGCAATGGTAATGAAACACATTTCTCTCAATGTGAATATACTTCAATTAACATC
AACTATAATCCACAACGTTATGGCAACGTAAATAGACAATGTTCATCGAATGAACTCGCT
GGAGTGCTGTGCATCAAGCCTACAATCAACCAAAATGATTTTGACATGATTAGATTTGAA
CCTGATAAGGATGAGATGTCAGATTCGGAACTGGTTGAAATGCAAGTTGATGGAGTTTGG
TACAGGATCTGCGACATATCGTGGGATATAACGGATGCAATTGTTGCTTGCCGTCAGATT
GGAATGTATGCAGCAAAGATGTCCTTGATCCCGGTTGTAGTAGGTGATTTTCAGACTGTG
GTGGAACTTGACTGCGCTGGATATGAAGATTCTATTCAGAGATGTCCACATGTACTCAGA
GACATAAATTGTCAAAATTATGCTGCAGTTGCTTGCTCACCAGATGCTCCAGACATCAGT
ATTGAAATTCCAGAGCTTGAACGATCAATTACTTTGATCTCGAAGGAAAATAAAAAACTG
ACATGTGCAAAGGAGGAAGGATGTGTGTCTACATCTGCTCTAAACATTGATTTGAATAGC
ACAGTCGGACACAGAAAGCTCCTCACCTTCTCGTCATATGTTCAGAACTTTGGAACGGCT
GATTTTAGACCCCCAACACCGAAGGGATCCTGGCACAGACACAAATGCCACAAGCATTAC
CACAGCATCACTGATTTCGCAACTTATGAACTTCTTCAACCAGACGGAGTGAAGGTAGCG
TCCGGACACAAAGTCAGTTTTTGTCTTCAAGACAGTAGTTGTGTTCATGGATATCACAAG
AAGTATGCTTGTTCAAATAGAGTGAAAGATGGAAATCAAGGGATCTCAATTGGATGCTCT
GATCATTACGGAAGATATTTGGATTGTCAATGGATTGATGTCACTGATGTAAGTCCAGGG
ATATATAAACTGAAGATCAGTTCAAATCCATATAAATATGTTCCCGAGTTGGACTATACG
AACAATATCGTTGTGTGTGATGTTGAAATTGGAGAACACAAAGGGAAGGGAAGAAACTGT
GTCTGGGGTAAGTTTTTTAAAACTGAATCCAAA

InterProScan

Gene3D	SRCR-like_dom_sf (IPR036772) - T[27-151] 3.5E-30 - T[162-258] 4.7E-13
SUPERFAMILY	SRCR-like_dom_sf (IPR036772) - T[31-147] 2.35E-28 - T[171-254] 8.24E-15
SMART	SRCR-like_dom (IPR017448) - T[34-145] 2.4E-31 - T[166-253] 4.7E-6
ProSiteProfiles	SRCR (IPR001190) - T[34-145] 24.959 - T[157-253] 15.638
PRINTS	SRCR (IPR001190) - T[34-50] 2.7E-10 - T[53-64] 2.7E-10 - T[68-78] 2.7E-10 - T[99-113] 2.7E-10
ProSitePatterns	SRCR (IPR001190) - T[39-76] .
Pfam	SRCR (IPR001190) - T[39-144] 2.4E-22 - T[171-253] 3.8E-10
Pfam	Lysyl_oxidase (IPR001695) - T[257-460] 5.9E-70
PRINTS	Lysyl_oxidase (IPR001695) - T[266-290] 2.6E-25 - T[313-334] 2.6E-25 - T[335-355] 2.6E-25 - T[409-428] 2.6E-25 - T[429-446] 2.6E-25

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LOXL2_HUMAN	37.862 %	287	5.57E-89
LOXL3_HUMAN	37.251 %	281	9.86E-87
LOXL4_HUMAN	36.364 %	278	1.48E-85