Aniseed - Transcript Card

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S800.g06717.01.t

Possible name(s)

SDE2; SF3A3

Gene model

Haaura.CG.MTP2014.S800.g06717

Location

S800 [14,646 / 23,601]

Sequences

Amino acid sequence

Length: 502

>Haaura.CG.MTP2014.S800.g06717.01.p
METILEQQRRLHEEKERLYDAMTKESMAKKSGMRETINSDHRMKHLLDSTMDIAVQLQDL
YEDNDELRKQEIQAIGGSNAFNEFYKRLREIKEFHKQHPNEIFVPMSMEFEELNKMRESS
SDESSALVEFTDEESYGKSLDLHESHMKYLNLKGIEKVSYIKYLDSFDRLFEIAKDKKNA
YYRLYLEGLLEYLVSFIERTKPLLSLITEFDKVSKKFESQWEAAEFPGWGKEAGSALAHS
GAHLDLSVFSSYEELASLGLDRLKSALMALNLKCGGTLDERASRLYSTKGKTLDEIEPTL
FTKNKMKLPKKVKPKKDKDIAFVEAQIYHLVEIVSEQRAFTKENVQRRQARTDTERDQDE
EEEGSDSDSGDDDDEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYSCEICGNQTYRGPK
AFQRHFAEWRHAHGMRCLGIPNTAHFANVTKIDDAMALWSKIKEMKNCERWNPDQEEEFE
DSAGNVVSKKTYEDLKRQGLL*

Nucleotide sequence

Length: 1,506

>Haaura.CG.MTP2014.S800.g06717.01.t
ATGGAAACTATATTAGAACAGCAACGTAGACTGCATGAAGAAAAAGAAAGACTTTATGAT
GCAATGACGAAAGAAAGTATGGCCAAAAAATCTGGGATGCGGGAAACAATTAATTCAGAC
CACAGAATGAAGCATTTGTTAGATAGCACCATGGACATAGCTGTTCAGCTTCAAGATCTA
TACGAAGACAATGATGAACTCAGAAAACAAGAAATACAGGCAATCGGTGGCTCTAATGCC
TTCAATGAATTTTACAAGCGTCTACGTGAGATAAAGGAATTTCATAAACAGCACCCGAAT
GAGATTTTTGTGCCAATGTCAATGGAGTTTGAAGAGCTCAACAAAATGCGTGAAAGCTCG
TCAGATGAGTCATCTGCTTTGGTGGAATTCACTGATGAAGAATCTTATGGGAAGTCACTT
GATCTCCATGAATCTCATATGAAATATTTGAACCTAAAAGGCATAGAAAAAGTTAGCTAC
ATCAAATACCTCGATAGCTTCGATAGATTATTTGAAATTGCGAAAGACAAAAAAAATGCC
TATTACCGCCTTTATTTAGAGGGATTGCTTGAGTACTTAGTTTCCTTCATCGAAAGAACA
AAACCTCTTCTGAGCCTCATTACTGAGTTTGACAAGGTGAGCAAGAAGTTCGAATCACAG
TGGGAAGCTGCCGAGTTTCCAGGCTGGGGTAAAGAAGCAGGAAGTGCTTTGGCTCATTCT
GGGGCCCATCTAGATTTGAGTGTCTTTTCATCATACGAGGAGTTGGCATCCTTAGGCCTT
GATCGTCTGAAATCTGCACTGATGGCTCTGAATTTGAAATGTGGTGGAACTCTTGATGAG
AGAGCTAGCAGACTATACTCTACAAAAGGAAAAACACTAGATGAAATCGAACCTACTTTA
TTCACAAAAAACAAAATGAAATTGCCAAAAAAAGTAAAACCGAAAAAAGACAAAGACATA
GCTTTCGTGGAAGCTCAGATCTATCACCTTGTTGAAATTGTCAGTGAACAAAGAGCTTTC
ACTAAGGAAAATGTACAGAGGCGTCAGGCAAGAACGGACACAGAGAGGGATCAGGATGAA
GAGGAGGAAGGCTCTGATAGTGACTCTGGAGATGATGATGATGAGATAATATACAACCCA
AAAAATCTTCCTCTCGGCTGGGATGGAAAGCCGATTCCTTATTGGTTGTATAAGCTCCAC
GGCTTAAACATCAACTACAGTTGTGAAATATGTGGCAATCAAACATATAGAGGTCCGAAA
GCTTTTCAGAGACATTTTGCGGAATGGAGGCATGCCCATGGAATGCGCTGTTTGGGAATT
CCTAATACTGCTCACTTTGCCAATGTGACAAAAATTGATGATGCAATGGCATTATGGTCC
AAGATAAAAGAAATGAAGAATTGTGAAAGATGGAACCCTGACCAAGAAGAAGAATTCGAA
GATTCGGCTGGTAACGTAGTCTCAAAAAAGACCTATGAGGATCTCAAAAGACAAGGATTG
CTGTGA

InterProScan

PANTHER	SF3A3 (IPR031776) - T[1-501] 2.1E-180
Pfam	SF3a60_bindingd (IPR021966) - T[74-100] 2.8E-12
Pfam	SF3A3_dom (IPR031774) - T[129-204] 8.0E-22
Pfam	DUF3449 (IPR024598) - T[324-500] 2.3E-76
ProSiteProfiles	Matrin/U1-C_Znf_C2H2 (IPR000690) - T[406-437] 8.937

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SF3A3_HUMAN	66.866 %	674	0