- Transcript 'KH2012:KH.C12.129.v1...' >
- Transcript 'KH2012:KH.C12.129.v1...' >
- Transcript 'Boleac.CG.SB_v3.S547...' >
- Transcript 'KH2012:KH.L97.10.v1....' >
- Transcript 'Haaura.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S7.g00265.01.t
Possible name(s)
PAX2; PAX5; PAX8
Gene model
Location
S7 [235,166 / 241,497]
Amino acid sequence
Length: 1,271
>Haaura.CG.MTP2014.S7.g00265.01.p
MVLNNNKYTSDNTDTICTKENRMSTRKKNDQAMKNSIESKPTPTKQRKGRRTKPVNNGVA
NKRGKDQFDDDSHTGDITIENIGVESNIEIESSKTEDEAQRKRHVEDMTEITQTTKIARI
DDSSSDVIIEMVEDDQIIMSTVESSGHAEEKEMTQTSAVGTSHSSVPNDELVVIQSEVVE
ETVTTSDTNIEVSVAGDNQDFGLELGEDNGQPQVQVVVEQELAEENSMVYENIKPEAKYK
KSSNNTATVAAPQGVNPAMMSNLLHTAAAVAASQNAAAATVQVVPGQATGTIQLVPSSEV
QNTQTLMASGIAPQSLSPQTIGMGEDGKPHVIPQPTSQPVFTYLVTSQGTLIAAHSSDGT
PLISPALNNKETAAIESKKLSEEDDSSSGHGNGVNQLGGMYVNGRPLPEPIRKRIVDLSH
QGVRPCDISRQLRVSHGCVSKILARYYETGSIRPGVIGGSKPKVATPYVVSKITEYKREN
PTMFAWEIRDRLLAENICSSDTVPSVSSINRIVRSKTADFMKDNQRLNDQANTPSPLLHI
IKGRKSTSSLSSQHNAIDAVVNQLVSGNMQQQGSNLPQYISLETVTTSGEQTMTPVVASH
TTVVSASTLPPPPIIPSTQLQEVKVSSQNLPQLFANLTPAQQLEILKSVGGENVIQQQTQ
TKDGSISVLSQAATTLSPIVTQASTISHQLQQDPRVQQHVENVSSAGVQVLTTQQAQQLL
MTSQGQVITQSPASQSNLVMTAQGQLVAAPVQTTQIVTSSAAQNIPTASVQQQTADQHQQ
VVMQLQDLNKVLAAAGGTTLTSTTVPLSSGVQAQTLQAQQVFSQPQTSMSFRVSELAAAA
AGIVGPSQVQIATPVGTGQQSIITMSPQQLQQLTAQGMVLQRVPLESQSQQEKTDEIVEI
TDESQIVSQTDDSSERTVTITPAVANQAEEGTVVAPGSHQQEVSRQQDSQQFIKMLQNAM
IVKQEPSTEGDANTAQQQSAVNQLLLAAQQQLQQTSNVQTVPQQGAAQLLSAAAVIGTQQ
QQVVTTAQSTIVGLSNSNANNNNSVLQQQQILAANPAMLTQLQQLANIQQQQQLLQSQQV
TTQVQQQPGIVHILSAAAQLQQQQTNTNANTNYTNLQQQLAMQMLSAAQLQKSPTNGNGS
KTSSGTLTELQPVSTLLSQLRPVSVQTNVSESYLVSASGVSSAVSGSTTTNVTLPPMVLP
AATCTVATTTTLPASGSTTVSLSQPFTTIYNEAWKLATNGQVSRTPQTDSSSSTSRDNTK
PTTSTSSTKS*
Nucleotide sequence
Length: 3,813
>Haaura.CG.MTP2014.S7.g00265.01.t
ATGGTCTTAAACAATAACAAATATACTAGTGACAACACAGATACGATTTGCACTAAAGAA
AACAGAATGTCAACAAGGAAGAAAAATGATCAGGCTATGAAAAATTCAATAGAATCCAAA
CCGACGCCGACAAAACAGAGAAAAGGACGCAGGACAAAACCTGTTAATAACGGTGTAGCG
AACAAAAGGGGCAAGGATCAATTCGATGATGATAGTCACACTGGTGATATCACTATTGAG
AATATTGGAGTCGAATCTAACATAGAAATTGAATCCAGTAAGACAGAGGATGAAGCTCAG
AGGAAGCGTCATGTGGAAGATATGACCGAGATTACGCAAACTACCAAGATCGCAAGAATT
GATGATTCTAGCAGCGATGTCATCATTGAAATGGTAGAAGATGACCAAATCATAATGTCC
ACAGTTGAATCAAGCGGCCATGCAGAGGAAAAAGAAATGACGCAAACATCAGCTGTAGGA
ACATCTCACTCTTCAGTTCCAAACGATGAGTTAGTCGTTATACAAAGTGAAGTTGTTGAA
GAAACAGTAACCACAAGTGACACTAACATCGAGGTTTCTGTAGCAGGAGATAATCAAGAT
TTTGGTTTGGAGTTGGGTGAGGATAACGGGCAGCCACAAGTTCAAGTTGTCGTAGAACAG
GAATTAGCTGAAGAAAATTCAATGGTGTACGAAAACATAAAACCGGAAGCAAAGTACAAG
AAAAGCTCCAACAACACTGCAACGGTTGCTGCACCACAAGGAGTGAATCCTGCTATGATG
AGCAATCTGTTACACACTGCCGCTGCCGTGGCAGCCTCTCAAAATGCAGCCGCCGCGACC
GTTCAGGTTGTTCCCGGACAAGCAACGGGGACGATTCAGCTAGTTCCTTCTTCAGAAGTA
CAAAATACTCAAACTCTTATGGCTAGTGGCATTGCTCCTCAGTCTCTGAGCCCACAAACA
ATAGGAATGGGTGAAGATGGCAAACCTCACGTGATTCCGCAGCCAACGAGTCAGCCTGTT
TTCACATATTTAGTTACGAGCCAGGGCACCTTGATCGCGGCTCATTCTAGTGACGGTACC
CCCTTAATTTCACCCGCACTCAATAACAAAGAGACCGCTGCTATCGAATCTAAAAAGCTA
TCTGAGGAAGATGACAGCTCATCTGGACATGGTAATGGAGTCAATCAACTTGGTGGGATG
TACGTGAATGGCCGCCCTCTACCAGAGCCGATCAGAAAGAGAATAGTGGATCTTTCCCAT
CAAGGAGTTCGTCCTTGTGATATATCCCGACAGTTACGTGTGTCTCATGGTTGCGTAAGC
AAGATATTAGCAAGATATTATGAGACGGGCAGCATACGACCCGGGGTAATCGGTGGAAGC
AAGCCAAAAGTAGCCACCCCGTATGTTGTAAGCAAAATTACAGAATACAAACGGGAGAAT
CCAACCATGTTTGCTTGGGAAATTCGAGACAGACTGCTTGCCGAAAATATATGTAGCAGT
GACACCGTTCCTAGCGTCTCATCGATCAACAGAATTGTGCGTAGCAAGACTGCTGATTTT
ATGAAAGACAATCAACGTCTCAATGATCAAGCAAACACGCCATCTCCATTATTACACATT
ATTAAAGGTCGGAAATCCACCTCAAGTTTATCATCACAGCACAATGCTATTGACGCTGTT
GTAAACCAACTTGTATCTGGCAATATGCAACAGCAAGGAAGTAATTTACCTCAATACATA
TCATTGGAAACCGTTACAACGTCAGGTGAACAGACTATGACGCCCGTAGTGGCATCTCAC
ACCACTGTGGTGTCGGCTTCAACCCTGCCACCTCCTCCAATCATACCTTCAACTCAACTG
CAGGAAGTTAAAGTCAGCTCTCAGAACTTGCCGCAACTATTTGCTAACTTAACTCCAGCA
CAACAATTAGAGATTTTAAAAAGTGTCGGTGGAGAAAATGTCATTCAACAACAGACACAG
ACAAAAGATGGATCCATATCTGTCTTGAGCCAAGCAGCGACGACCTTGTCTCCAATAGTA
ACACAAGCAAGCACAATCTCTCATCAACTGCAACAAGACCCAAGGGTACAACAACATGTT
GAAAATGTTTCGTCAGCCGGGGTTCAGGTATTGACAACACAGCAAGCTCAACAGCTACTG
ATGACATCACAGGGCCAAGTTATTACACAAAGTCCAGCATCTCAAAGCAATTTAGTGATG
ACAGCACAGGGACAGTTAGTGGCTGCCCCAGTCCAAACTACGCAAATAGTCACTTCTTCA
GCAGCGCAGAATATACCTACGGCTTCTGTACAGCAGCAGACTGCAGATCAACATCAGCAA
GTTGTAATGCAACTACAAGACTTGAACAAAGTTTTAGCTGCGGCCGGGGGGACCACTCTA
ACTTCCACAACAGTTCCGCTTAGTTCTGGAGTGCAAGCTCAAACTCTTCAGGCTCAACAA
GTTTTTTCTCAACCACAAACAAGTATGTCATTTCGTGTGAGCGAGTTAGCAGCCGCGGCG
GCTGGGATTGTCGGTCCAAGCCAGGTTCAAATTGCCACACCTGTCGGCACAGGCCAGCAA
AGCATCATTACGATGTCACCCCAGCAGTTACAACAACTCACCGCACAGGGAATGGTATTG
CAAAGGGTACCACTTGAATCACAATCTCAACAAGAGAAAACTGATGAAATAGTCGAGATC
ACAGACGAATCTCAGATAGTTTCTCAAACAGATGATTCTTCAGAGAGAACGGTGACTATT
ACACCTGCTGTTGCAAACCAGGCCGAGGAAGGTACAGTTGTAGCACCAGGTTCGCATCAA
CAAGAGGTATCACGACAGCAAGATTCACAACAGTTCATAAAAATGTTACAAAATGCGATG
ATTGTCAAACAAGAGCCCTCCACAGAAGGTGACGCCAATACAGCTCAGCAACAATCTGCC
GTGAATCAATTGCTATTGGCTGCTCAACAACAGTTGCAACAAACATCGAATGTACAGACA
GTGCCCCAACAAGGTGCTGCTCAGCTTTTATCTGCAGCTGCAGTAATTGGAACTCAACAG
CAGCAGGTGGTAACGACCGCACAATCTACAATAGTTGGACTATCAAACAGTAATGCAAAC
AATAACAACAGCGTCTTACAGCAGCAACAAATCTTGGCTGCGAATCCAGCGATGCTGACA
CAACTTCAGCAACTTGCCAACATTCAACAGCAGCAACAGTTATTGCAATCTCAGCAGGTA
ACCACGCAAGTACAACAGCAACCTGGAATAGTACACATCCTATCAGCAGCAGCACAGTTA
CAGCAACAGCAAACAAACACCAATGCTAACACGAACTACACAAATCTTCAGCAACAATTG
GCGATGCAGATGTTGTCAGCAGCACAACTACAGAAATCTCCGACGAACGGAAATGGCAGC
AAAACATCTTCGGGAACATTGACGGAACTCCAGCCTGTTAGTACTTTGTTGAGCCAATTG
AGGCCAGTTTCTGTGCAAACAAATGTTTCAGAATCCTATCTTGTTTCAGCTTCTGGAGTA
TCTTCAGCAGTATCTGGTTCTACTACCACTAATGTAACTTTACCACCAATGGTACTGCCA
GCTGCAACATGTACAGTGGCCACAACCACTACACTGCCGGCATCAGGTTCTACAACAGTA
AGCTTGTCTCAGCCATTCACAACAATCTACAATGAAGCCTGGAAACTGGCAACTAACGGT
CAGGTATCAAGAACACCTCAAACAGACTCTTCATCATCTACATCTCGAGACAATACGAAA
CCGACCACCTCAACCAGTTCTACAAAAAGTTGA
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[382-458] 3.4E-38 - T[459-522] 7.1E-33 |
| CDD |
Paired_dom (IPR001523) - T[389-516] 1.27822E-74 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[390-516] 60.981 |
| SMART |
Paired_dom (IPR001523) - T[390-514] 1.7E-87 |
| Pfam |
Paired_dom (IPR001523) - T[393-514] 1.0E-67 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[393-514] 2.03E-36 |
| PRINTS |
Paired_dom (IPR001523) - T[394-409] 3.8E-40 - T[412-430] 3.8E-40 - T[432-449] 3.8E-40 - T[450-467] 3.8E-40 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[424-440] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX5_HUMAN | 82.443 % | 245 | 7.93E-72 |
| PAX2_HUMAN | 84.375 % | 244 | 2.75E-71 |
| PAX8_HUMAN | 84.496 % | 247 | 6.45E-72 |