- Transcript 'KH2012:KH.L34.16.v1....' >
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- Transcript 'Haaura.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S682.g06235.01.t
Possible name(s)
LIN28B; YBX1; YBX2
Gene model
Location
S682 [29,502 / 35,262]
Amino acid sequence
Length: 381
>Haaura.CG.MTP2014.S682.g06235.01.p
MSAVEVPEEVHNDEPVKAEKKVIASHCTGVVKWFNVRNGYGFINREDNKEDVFIHQTAII
RNNPRKYLRSVGDGELVEFDVVEGEKGLPEAANVTGPEGAPVQGSKYAADRRRYRPRYRR
SRQSSNNQAREIGEEGGAKPQDNDDSIEGGQERPPPPRRYRRRPWFRRPRNIPQDGQTVE
QGEEVKEEDGEDKPQRRPRRPRPRRPRKPISGQEQQEENTEGGEDQANGEEGAERPPPPR
RRRFRPRRPRPPRQEDGENQVENGEGQGEQQEQQSRYRPRRFRTRRPRGPPRPVKSGDEG
EPIAPTKQDNEVSQVVNKSTIRNQCNLSYRYRVHVLSLHILDSYSPHIVQGFGEVQWPWL
WELFLLILFVLYLKFPSLDS*
Nucleotide sequence
Length: 1,151
>Haaura.CG.MTP2014.S682.g06235.01.t
ATGTCTGCCGTTGAGGTACCTGAAGAAGTCCATAACGATGAACCTGTGAAGGCGGAAAAG
AAGGTTATCGCCTCTCACTGTACTGGTGTAGTAAAGTGGTTCAATGTCCGTAATGGTTAT
GGCTTCATAAACAGAGAGGATAATAAGGAGGATGTATTTATCCATCAAACTGCAATCATT
CGGAACAATCCACGAAAGTACCTACGCAGCGTAGGAGATGGAGAGCTGGTTGAATTTGAC
GTGGTCGAGGGAGAAAAGGGTCTTCCTGAAGCTGCTAATGTTACTGGACCTGAGGGAGCC
CCTGTACAAGGCAGTAAATATGCTGCTGATAGACGTAGATACCGACCACGATACCGCAGA
TCAAGACAATCGTCCAACAATCAGGCAAGAGAAATTGGGGAAGAGGGGGGTGCAAAACCG
CAGGACAATGATGATAGTATTGAGGGTGGGCAGGAAAGACCACCACCACCTAGGAGGTAC
AGAAGACGGCCGTGGTTCCGTCGACCAAGAAATATTCCTCAGGATGGTCAAACTGTAGAA
CAAGGAGAGGAGGTTAAAGAAGAAGATGGAGAAGACAAACCCCAGCGTCGTCCTAGGCGT
CCAAGACCACGTCGTCCGAGGAAGCCCATTTCCGGGCAGGAGCAACAGGAAGAGAATACC
GAAGGTGGAGAGGATCAAGCCAATGGTGAAGAAGGTGCTGAACGTCCTCCACCACCTCGC
AGACGTAGATTCAGACCACGTCGGCCCCGCCCCCCTCGTCAAGAAGATGGAGAAAATCAA
GTGGAAAATGGAGAGGGGCAAGGAGAGCAACAAGAACAGCAGAGCAGATATCGGCCCCGT
CGATTTCGTACACGCCGCCCGAGAGGTCCGCCACGGCCAGTAAAGAGTGGCGATGAAGGA
GAGCCAATTGCTCCAACAAAACAGGACAATGAAGTCAGTCAGGTGGTCAACAAATCAACT
ATCCGTAACCAATGTAACTTGTCATACAGATACCGTGTTCATGTTCTTTCACTGCATATT
TTGGATTCATACTCCCCACACATCGTACAAGGTTTTGGTGAAGTACAATGGCCCTGGTTG
TGGGAATTATTTTTATTGATCTTGTTTGTACTATATCTGAAATTTCCATCTTTGGATTCT
TAATTGTCTAA
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[24-96] 7.59E-20 |
| Pfam |
CSP_DNA-bd (IPR002059) - T[27-96] 4.4E-23 |
| CDD |
CSP_DNA-bd (IPR002059) - T[27-96] 8.68E-21 |
| SMART |
CSD (IPR011129) - T[28-97] 1.9E-20 |
| PRINTS |
CSP_DNA-bd (IPR002059) - T[29-44] 5.2E-19 - T[50-59] 5.2E-19 - T[69-87] 5.2E-19 |
| ProSitePatterns |
Cold-shock_CS (IPR019844) - T[40-59] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| YBOX1_HUMAN | 58.046 % | 163 | 2.14E-47 |
| YBOX2_HUMAN | 41.29 % | 140 | 4.26E-38 |