Aniseed - Transcript Card

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S611.g05946.01.t

Possible name(s)

ACTA1; ACTA2; ACTC1

Gene model

Haaura.CG.MTP2014.S611.g05946

Location

S611 [44,322 / 45,663]

Sequences

Amino acid sequence

Length: 157

>Haaura.CG.MTP2014.S611.g05946.01.p
MSDGEEDTTAIVCDNGSGLVKSGFAGDDAPRAVFPSIVGRPRHQGVMVGMESAGIHETTY
NSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSV
WIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF*

Nucleotide sequence

Length: 471

>Haaura.CG.MTP2014.S611.g05946.01.t
ATGTCTGATGGTGAAGAAGATACAACTGCAATCGTCTGCGACAATGGATCAGGATTGGTT
AAATCTGGTTTTGCCGGTGATGATGCTCCAAGAGCAGTATTCCCTTCTATTGTAGGACGA
CCAAGACATCAAGGTGTTATGGTAGGTATGGAATCTGCCGGTATTCATGAAACAACATAT
AACTCTATCATGAAATGCGATATTGACATTCGAAAAGATCTTTATGCAAACAACGTACTT
TCCGGAGGAACCACCATGTATCCTGGTATTGCTGATCGTATGCAAAAAGAAATCACTGCT
CTTGCCCCAAGTACCATGAAGATCAAAATCATTGCTCCTCCCGAACGTAAATACTCTGTA
TGGATCGGAGGATCAATTCTTGCTTCTCTTTCGACCTTCCAGCAGATGTGGATCAGTAAA
CAAGAATACGATGAGGCAGGACCATCAATCGTACACAGAAAATGTTTCTAA

InterProScan

PANTHER	Actin (IPR004000) - T[5-50] 4.0E-96 - T[48-155] 4.0E-96
Pfam	Actin (IPR004000) - T[6-47] 1.1E-11 - T[52-156] 2.9E-46
SMART	Actin (IPR004000) - T[8-156] 9.6E-9
ProSitePatterns	Actin_CS (IPR004001) - T[137-145] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
ACTA_HUMAN	96.46 %	230	9.63E-76
ACTS_HUMAN	94.69 %	228	5.06E-75
ACTC_HUMAN	96.46 %	230	8.01E-76