- Transcript 'Haaura.CG.MTP2014.S6...' >
- Transcript 'Haaura.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S6077.g11038.01.t
Possible name(s)
POC1A; POC1B; RACK1
Gene model
Location
S6077 [600 / 3,278]
Amino acid sequence
Length: 320
>Haaura.CG.MTP2014.S6077.g11038.01.p
MSEQMTLRGTLQGHNGWVTQIATTPAYPDMVLSSSRDKSIILWKLTRAEGTYGIPQRRMT
AHSHFISDIVISSDGQFALSGSWDGELRLWDLTLGCSTRRFKGHTKDVISVAFSTDNRQI
VSASRDRTIKLWNTLGVCKYTIMDEGHSDWVSCVRFSPNAGNPVIVSCGWDKTVKVWNLT
NCKLKTNHFGHTAYCNAVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLNGEAEIHAMA
FSPNRYWLAAACGPCVKIWDLEGKVVVDELKPELINIANSKADPPECLSLAWSADGQTLF
AGYADNLIRVWQVSVPAHI*
Nucleotide sequence
Length: 1,039
>Haaura.CG.MTP2014.S6077.g11038.01.t
ATGATCATTAAATATTTCCGACGCCATTGGGTAGCCTGTGAATTTTTCGATCTGTTTGTT
ACTGCATTCAAAAAGAAAAATGTCAGAACAAATGACACTGCGCGGAACCCTCCAGGGTCA
TAATGGCTGGGTGACTCAAATTGCAACTACTCCAGCGTATCCGGACATGGTTCTATCTTC
TTCACGAGATAAAAGTATTATCCTGTGGAAACTTACCCGGGCAGAGGGGACGTATGGTAT
TCCGCAACGCAGAATGACTGCGCATTCTCACTTCATCTCGGATATTGTCATATCATCAGA
TGGCCAGTTTGCTTTGTCAGGTTCCTGGGATGGTGAATTGAGACTATGGGATCTTACATT
AGGCTGTAGTACACGACGTTTCAAAGGGCACACAAAAGATGTTATTTCTGTTGCATTCTC
AACTGACAATCGACAGATTGTGTCAGCATCAAGGGATAGAACCATCAAACTTTGGAACAC
TTTGGGAGTTTGTAAATATACAATAATGGATGAAGGACATTCTGACTGGGTCTCTTGTGT
TCGCTTCTCACCGAATGCTGGGAATCCGGTTATCGTGTCATGTGGATGGGATAAAACTGT
TAAGGTTTGGAATCTAACCAACTGCAAGCTAAAAACTAATCATTTTGGGCATACTGCATA
TTGCAATGCTGTTACTGTTTCTCCTGATGGATCACTTTGTGCTTCTGGAGGGAAAGACGG
GCAAGCAATGCTTTGGGATCTAAATGAAGGAAAACATCTGTATACATTGAATGGTGAAGC
TGAAATTCATGCAATGGCATTCTCTCCTAATCGCTATTGGCTTGCTGCAGCATGTGGTCC
ATGTGTTAAAATCTGGGATTTGGAAGGAAAAGTTGTGGTTGATGAATTGAAACCTGAATT
GATTAACATCGCAAATAGCAAAGCTGACCCACCAGAATGCCTGTCTCTTGCATGGTCTGC
AGATGGACAGACCTTGTTCGCTGGATATGCTGATAACTTGATCCGAGTATGGCAAGTTTC
AGTACCAGCGCATATCTAA
| SMART |
WD40_repeat (IPR001680) - T[4-44] 6.6E-6 - T[52-91] 1.8E-5 - T[94-133] 1.4E-9 - T[135-178] 3.4E-9 - T[180-220] 1.7E-7 - T[223-260] 0.025 - T[271-312] 0.11 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[4-312] 5.31E-73 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[8-317] 8.8E-132 |
| Pfam |
WD40_repeat (IPR001680) - T[9-44] 0.0025 - T[55-91] 1.9E-6 - T[98-133] 7.8E-8 - T[145-178] 1.9E-6 - T[188-220] 8.1E-5 - T[224-260] 2.8E-4 - T[289-311] 0.0091 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[11-53] 11.11 - T[59-92] 13.215 - T[101-133] 15.621 - T[144-187] 12.647 - T[188-229] 13.449 - T[289-319] 9.773 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[11-319] 50.146 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[78-92] 5.3E-8 - T[120-134] 5.3E-8 - T[207-221] 5.3E-8 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[78-92] . - T[120-134] . - T[165-179] . - T[207-221] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| POC1A_HUMAN | 27.619 % | 115 | 3.46E-29 |
| POC1B_HUMAN | 27.532 % | 121 | 4.38E-31 |
| RACK1_HUMAN | 79.365 % | 540 | 0 |