- Transcript 'Haaura.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S544.g05652.01.t
Possible name(s)
PAX3; PAX6; PAX7
Gene model
Location
S544 [25,382 / 36,474]
Amino acid sequence
Length: 714
>Haaura.CG.MTP2014.S544.g05652.01.p
MVVELTDNVWQSGDADKAITSDTCQGRVNQLGGVFINGRPLPNHIRHKIVEMAAHGIRPC
VISRQLRVSHGCVSKILCRYQETGSIKPGAIGGSKPKVTNSEIESKIEQYKKDSPSMFSW
EIRDQLIKEGLCDRSSAPTVSAISRILRSKGCDTSNESAEDPENGNTNSDTSSNGATGER
EGDEGDSDCDSEPELPLKRKQRRSRTTFSADQLEELERCFERTHYPDIYTREELAQRTRL
TEARVQVWFSNRRARWRKQMAAQQLPAIHPHHTHPHLPHHLGAYHQTIAAAGMSAHNYML
QAAAAAQHQPPPSSNPLAQNGHSSHYAAHHPNAHGHLPTTPTAASAGTSVCGPIESSFTS
PTAHDLSSVHRHTHHPLSSPLHHSHPYSQAGMRYDGSHDAALNVAAVAAGYGLVGASAAA
AARYSAQFPSTAFGDGYHQHHTLSPESSIFGVNGSVHSHAPGAADLTVSDYGPRQTESSH
ARQHQSSAAVGGSTTRTSENHSPSSSSPRQQHHTQGGISHDSVTGNGRRSESSAGSHDNH
PRNGVANSTSSPVTTSESHVAGISESVYNQRPSNAPMHHQQQSHQHSAAHLQHLRGGPSV
DHTSSNGNQMIQSSQYSLMHRSNVPDHSSIPSAAAYSAGFGVTADPSMATAAHQYHTTHN
PFASCQYSGYGQAASDYENAGITALRMKSREHSAALGLISVGAGGATSMQPAY*
Nucleotide sequence
Length: 2,142
>Haaura.CG.MTP2014.S544.g05652.01.t
ATGGTGGTGGAATTAACGGATAATGTTTGGCAAAGTGGAGACGCGGACAAAGCAATCACA
TCCGATACCTGTCAAGGTCGAGTGAATCAGCTTGGAGGGGTTTTCATCAACGGCAGACCA
TTGCCAAATCATATACGTCATAAAATCGTGGAAATGGCGGCACACGGAATTCGTCCATGC
GTCATAAGTCGTCAGCTTCGAGTTTCGCACGGGTGCGTAAGCAAAATATTATGCCGCTAC
CAAGAAACGGGATCCATCAAACCCGGCGCCATTGGTGGGAGCAAACCGAAAGTCACTAAT
TCTGAAATCGAATCGAAAATCGAGCAATATAAGAAAGACAGTCCGTCGATGTTTAGCTGG
GAAATTAGAGATCAGCTAATAAAGGAAGGGTTATGTGACAGAAGTTCTGCTCCGACTGTC
AGCGCTATCAGTAGGATCCTGAGATCGAAAGGCTGTGATACTTCGAACGAATCAGCAGAA
GACCCCGAAAACGGAAATACAAATTCCGACACAAGCAGCAACGGTGCGACCGGTGAAAGA
GAGGGAGATGAAGGGGATTCAGATTGCGACTCCGAACCTGAACTACCGTTGAAACGCAAG
CAGAGAAGAAGTAGGACGACGTTTAGTGCAGATCAGCTGGAGGAACTGGAGAGATGCTTC
GAAAGGACTCACTATCCTGATATTTATACTCGTGAAGAGCTGGCGCAGCGAACTCGGTTA
ACCGAAGCCAGAGTGCAGGTATGGTTTAGCAATCGCAGGGCACGGTGGAGAAAGCAAATG
GCGGCTCAACAACTTCCTGCAATACATCCTCATCATACTCACCCCCACCTTCCTCATCAT
CTCGGAGCATATCATCAAACGATAGCTGCAGCCGGCATGTCAGCTCACAACTACATGTTG
CAAGCCGCCGCAGCTGCTCAACATCAGCCGCCTCCCTCTAGTAATCCTCTCGCTCAAAAC
GGTCACTCCTCCCACTATGCTGCTCATCATCCTAACGCACATGGACACTTGCCAACAACT
CCTACTGCGGCATCAGCTGGTACTAGCGTATGTGGACCAATAGAATCCTCATTTACATCG
CCCACTGCCCACGATCTAAGTTCAGTTCATCGTCATACCCATCACCCGCTCTCCTCTCCT
CTACACCACAGCCACCCATATTCGCAAGCTGGGATGCGATATGACGGTTCTCATGACGCA
GCACTCAACGTGGCGGCAGTGGCCGCTGGTTACGGTCTTGTAGGTGCATCTGCAGCAGCC
GCTGCGCGGTATTCGGCTCAATTTCCCTCCACGGCATTTGGAGATGGATATCACCAGCAT
CACACCTTGTCACCAGAATCCTCCATCTTTGGAGTCAACGGGAGTGTCCACTCTCACGCA
CCAGGAGCAGCGGATCTAACTGTTAGCGATTACGGTCCACGACAAACAGAATCATCACAC
GCCAGACAGCATCAGTCATCCGCAGCAGTTGGTGGTAGCACTACACGAACATCAGAAAAT
CATTCTCCATCATCTTCTTCTCCTCGTCAACAACATCATACCCAAGGGGGAATATCTCAC
GATAGTGTAACGGGTAACGGACGTAGATCTGAGTCATCAGCCGGAAGCCACGATAACCAT
CCGCGAAATGGTGTCGCTAATTCCACTTCATCTCCAGTAACGACGTCCGAATCACACGTA
GCAGGTATATCAGAATCAGTATATAACCAGAGGCCAAGCAATGCTCCCATGCATCACCAG
CAGCAGTCTCATCAACATTCTGCAGCTCATTTGCAACATCTCAGAGGAGGACCATCAGTC
GATCATACTTCCAGCAATGGAAATCAAATGATCCAGTCTAGCCAGTATTCACTTATGCAT
CGATCGAACGTACCGGATCATTCGTCCATTCCATCGGCGGCAGCATATTCTGCTGGTTTT
GGCGTAACTGCTGATCCAAGTATGGCGACTGCGGCTCATCAGTATCACACCACACATAAT
CCATTCGCTTCCTGTCAGTATTCTGGATATGGTCAAGCAGCATCAGACTATGAAAATGCG
GGCATCACAGCACTCAGGATGAAGTCGCGAGAGCACAGTGCTGCTCTCGGTCTGATATCA
GTAGGAGCCGGAGGAGCAACAAGTATGCAGCCAGCTTACTGA
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[24-92] 1.2E-37 - T[93-156] 1.1E-27 |
| SMART |
Paired_dom (IPR001523) - T[24-148] 6.2E-85 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[24-150] 58.675 |
| CDD |
Paired_dom (IPR001523) - T[25-151] 4.20593E-80 |
| Pfam |
Paired_dom (IPR001523) - T[25-148] 3.1E-69 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[26-151] 5.15E-38 - T[196-267] 7.35E-27 |
| PRINTS |
Paired_dom (IPR001523) - T[28-43] 1.7E-36 - T[46-64] 1.7E-36 - T[66-83] 1.7E-36 - T[84-101] 1.7E-36 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[58-74] . |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[199-259] 21.135 |
| SMART |
Homeobox_dom (IPR001356) - T[201-263] 8.7E-28 |
| CDD |
Homeobox_dom (IPR001356) - T[202-260] 2.37477E-26 |
| Pfam |
Homeobox_dom (IPR001356) - T[202-258] 1.2E-22 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[234-257] . |
| ProSiteProfiles |
OAR_dom (IPR003654) - T[680-693] 9.936 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX7_HUMAN | 69.38 % | 367 | 1.98E-119 |
| PAX3_HUMAN | 67.626 % | 382 | 8.69E-126 |
| PAX6_HUMAN | 49.042 % | 258 | 8.52E-79 |