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- Transcript 'Haaura.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S501.g05425.01.t
Possible name(s)
CHL1; L1CAM; NRCAM
Gene model
Location
S501 [15,248 / 38,263]
Amino acid sequence
Length: 1,288
>Haaura.CG.MTP2014.S501.g05425.01.p
MLTFFLGWIIVALGGTSVSKAVYIPAEVPRPPTIIEQTEGVTYALQKLEVRLKCLADALP
NVKESKGYYWKKDGDLITNITQEDDLTNNSSIVMSKYNGTIWIRGSANFTTENLLPYEGK
YQCFASNERGTAMSRFISLKVAKKVSYIVPADKTIKVTEGESKKIACRQNNAEGIETWWN
FLPDTVKLSNRIAKAPDGTIVFSNIVEKEDNGLKFYCTLKHLPTRTSRDGPHYTLSVKPD
GFPSDSEPTIILPKYEDEQRVVLLGDELKLACIAIGRPTPSVSWTKMDGELVGDRYEMRD
FNRTLYIPTVTYGDAGTYTCTVSNHFDNRKRNISVKVEAKPYFPDNDKQPTNTIKVPGDD
VAITCAPEGTPTPTVEWFINGEPIEETTDDPRRDVYSDSIVVRNLTDQDTVVYQCIGRNK
HGIVMGQAFVNVVVSKPFEVAGNSYFYRKMEGDSVEMQCKMFASPAAVNTWTKNEIMDGD
VTDDNRFKKKKNNALKITKINLQDSGQYTCEASNEHGEDSIEMTLLVLKKTMVRPAVEQV
RVTNGKDVVMEVKLDVDANLTVKSVKWFKDGNVMYDGEEMELLSVTMSDAGVYKVTVKTD
MDSATTAVELIVQDVPSPPSNAIFTANPSDAYVGTLTWEPPATDNNSPIEDYKVEYEADE
LYPDRWVPLIDSVEGDVTTVEVQYLESWLSYSFRVWAKNGIGWSVSSSNKTASYKTPPSI
PRINPTGVSGKGNAPDNMVITWNQVEPLKYSGQGFGYEVSWCLESNCTWFEVFVSNDTTS
YVVTNTPPYTRYLINVTSANNLGSTDGVESVVGYSGEDVPQSSPNLTDSDMGDDGTVTIS
WDPPPEDDTRGLVTGYRVRVSEKETGKYEDRFAGPNEVRFYLNDLTPNTEYEISIAVKNS
AGESNFSAPTYVKTPEGFSGPPDNLTAVRRTVDTITIAWQEPKDKNGIISSYRVKYLTTV
ENLTLENTAEIKHNTTTSILVKLEDLLVGVPYNVTVCAATGRGYSDDCATLSISTRQPEA
PGENQYKIYADDNLANITWRTLEEEEENGIPTEYYYIEHKKARDVNEEWIRSEKISTRAG
VKHLYNVEELEPGTQYEIRLIATNDIGTTKSKSKIFRTSGVSKQQATAGIIGQAWFIAIL
VIIPLLLILLIVICIVQRKKGGKYSVSDKEEQLVKLESQPMNNDDKGKYSVNPNDDTIKE
NANNISEAHINNPLQSRRTRGDSVGGNSIEVFGSGDTRDFEEDGSFIDQYGVDRRSNSKS
EGVESPASDGTKDVSEVQKKLLEESGN*
Nucleotide sequence
Length: 3,864
>Haaura.CG.MTP2014.S501.g05425.01.t
ATGCTCACTTTTTTTCTTGGTTGGATAATAGTAGCGCTCGGTGGTACGTCTGTGAGCAAG
GCCGTTTACATCCCTGCCGAAGTACCTCGACCGCCAACAATCATAGAGCAGACGGAAGGA
GTCACGTATGCCCTGCAGAAATTAGAAGTAAGACTAAAATGTCTGGCCGATGCACTACCA
AATGTAAAGGAATCTAAAGGGTACTACTGGAAAAAAGACGGAGACCTTATTACGAATATC
ACACAGGAAGACGACCTGACCAACAACAGCTCTATCGTTATGTCGAAATACAACGGTACC
ATTTGGATAAGAGGGAGCGCAAACTTTACCACTGAGAATCTTCTGCCGTACGAGGGAAAG
TATCAATGTTTTGCGAGTAACGAAAGAGGAACTGCCATGTCAAGATTTATTTCCTTGAAA
GTCGCTAAAAAGGTTTCGTACATCGTTCCAGCAGACAAGACCATAAAAGTGACAGAAGGT
GAATCTAAGAAGATAGCATGTCGACAAAACAACGCAGAAGGCATTGAAACTTGGTGGAAT
TTTTTACCCGATACTGTGAAGCTATCTAACCGAATTGCGAAGGCTCCGGACGGGACGATA
GTATTTTCCAATATTGTAGAAAAGGAGGACAACGGTCTGAAGTTTTATTGTACTCTGAAA
CATCTTCCAACACGAACATCACGAGATGGTCCACATTACACCCTTTCTGTTAAACCAGAT
GGATTTCCTTCGGACTCTGAGCCAACGATTATTCTACCCAAATATGAGGACGAACAGCGG
GTAGTATTGCTTGGAGATGAGCTGAAACTGGCCTGTATTGCAATTGGAAGACCGACACCT
TCGGTATCATGGACTAAGATGGATGGAGAGCTGGTGGGCGATCGATATGAAATGCGTGAT
TTTAACAGAACGCTTTACATTCCCACCGTGACTTACGGCGATGCCGGAACATACACTTGT
ACTGTGAGTAACCACTTCGATAACCGCAAACGTAACATTTCGGTGAAAGTCGAAGCAAAG
CCTTACTTCCCTGACAACGACAAACAGCCTACGAACACGATAAAAGTACCGGGTGATGAC
GTCGCTATCACCTGCGCCCCAGAAGGAACGCCGACGCCCACAGTGGAGTGGTTCATTAAT
GGAGAACCAATTGAAGAAACGACAGACGATCCTAGAAGAGATGTATATAGTGACAGCATA
GTAGTAAGAAATCTAACCGACCAGGACACTGTGGTTTATCAGTGCATAGGACGCAACAAA
CACGGCATCGTGATGGGCCAGGCATTCGTGAACGTAGTTGTTTCCAAGCCTTTCGAAGTG
GCTGGAAATTCCTATTTTTATCGAAAAATGGAAGGCGACTCGGTCGAAATGCAATGCAAA
ATGTTCGCATCGCCCGCAGCCGTTAATACTTGGACGAAAAATGAAATTATGGATGGTGAT
GTAACTGACGATAACAGGTTCAAAAAGAAGAAAAACAACGCCCTCAAAATTACAAAGATA
AATTTGCAAGACTCTGGTCAGTACACTTGTGAAGCATCTAACGAACATGGTGAAGATTCT
ATCGAAATGACTTTACTCGTCTTGAAGAAGACTATGGTGAGACCTGCGGTCGAGCAAGTT
CGTGTTACAAATGGGAAAGACGTCGTAATGGAGGTCAAGCTGGATGTCGATGCAAACCTG
ACAGTCAAATCGGTAAAATGGTTTAAAGATGGCAACGTCATGTATGACGGCGAAGAAATG
GAGTTACTGAGTGTGACTATGTCAGACGCAGGAGTTTACAAAGTGACAGTGAAAACAGAT
ATGGACAGTGCTACTACAGCAGTCGAGTTGATTGTCCAAGACGTTCCCAGTCCGCCTAGC
AATGCGATATTCACAGCGAATCCATCAGACGCCTACGTCGGCACTTTGACGTGGGAGCCA
CCGGCTACTGACAACAATTCACCCATAGAAGATTATAAAGTGGAATACGAAGCTGATGAA
CTTTATCCTGATCGATGGGTACCTTTGATCGACTCTGTAGAAGGGGATGTTACCACAGTT
GAAGTTCAATATCTCGAAAGCTGGCTGTCTTACAGCTTTCGGGTCTGGGCGAAAAACGGT
ATCGGATGGAGTGTGTCATCAAGTAACAAAACTGCTTCGTATAAAACACCGCCCTCAATA
CCTAGGATAAACCCTACCGGCGTCAGTGGTAAGGGGAATGCACCTGACAACATGGTAATC
ACTTGGAATCAAGTCGAACCACTCAAATATTCCGGCCAAGGATTTGGATATGAAGTCAGC
TGGTGCCTCGAATCCAACTGCACTTGGTTTGAAGTTTTCGTTTCAAACGATACTACTTCA
TACGTCGTCACAAATACCCCTCCCTATACCAGATATCTCATTAACGTGACCAGCGCCAAC
AATCTCGGTTCCACTGACGGGGTGGAATCTGTCGTTGGGTATTCCGGAGAAGATGTACCT
CAGTCTTCACCTAACCTTACCGATTCCGATATGGGCGACGATGGCACCGTTACAATTTCG
TGGGATCCGCCACCTGAAGACGATACGAGAGGACTTGTTACTGGATATCGCGTACGAGTC
TCCGAAAAAGAAACAGGAAAATATGAAGATCGTTTTGCGGGACCAAACGAAGTGAGATTT
TATCTAAATGATCTGACTCCAAACACGGAATACGAAATATCAATTGCAGTGAAAAACAGC
GCTGGAGAGAGCAATTTTTCGGCTCCTACTTACGTGAAAACTCCAGAAGGATTCTCTGGA
CCACCGGATAACTTAACTGCGGTAAGGCGCACTGTGGATACCATCACTATAGCATGGCAG
GAACCAAAGGATAAAAACGGAATTATATCAAGCTATCGTGTGAAATATCTCACTACTGTT
GAAAACTTGACACTGGAAAACACGGCGGAAATAAAGCATAATACAACGACAAGCATTTTA
GTCAAATTAGAAGACCTCTTGGTGGGTGTGCCGTATAATGTGACTGTGTGTGCGGCCACG
GGACGCGGCTACAGCGACGATTGCGCCACTCTGTCCATTTCAACACGGCAGCCGGAAGCT
CCGGGAGAAAATCAATATAAGATTTATGCTGATGACAATTTAGCGAACATTACCTGGCGA
ACGCTAGAAGAAGAAGAAGAAAACGGAATTCCGACAGAATACTATTATATTGAACACAAA
AAGGCTAGAGATGTAAATGAGGAATGGATAAGGTCAGAAAAAATCTCGACCCGTGCCGGC
GTGAAACATTTGTATAACGTGGAGGAACTGGAACCAGGAACTCAGTATGAAATTCGATTG
ATTGCTACAAACGACATCGGCACGACGAAATCAAAATCGAAAATTTTCAGAACGAGTGGA
GTATCAAAACAACAGGCGACTGCTGGAATCATAGGACAAGCATGGTTCATTGCTATTTTA
GTCATCATTCCATTGCTCCTTATACTGCTAATTGTCATCTGCATCGTTCAACGCAAAAAA
GGCGGGAAATATTCAGTATCAGATAAGGAAGAGCAGTTGGTCAAACTTGAATCTCAGCCA
ATGAACAACGATGACAAAGGAAAATATAGTGTTAATCCTAACGACGATACTATCAAGGAA
AATGCAAATAACATCTCTGAGGCACATATCAATAACCCTCTGCAGTCTCGACGCACTCGT
GGTGATAGCGTCGGGGGTAATTCCATAGAGGTGTTCGGCAGCGGAGACACCCGTGATTTC
GAAGAAGATGGTTCCTTTATTGATCAGTACGGCGTCGATCGCAGATCGAACAGCAAATCG
GAAGGCGTGGAATCGCCTGCTAGTGACGGTACCAAAGACGTAAGTGAAGTGCAGAAAAAG
TTACTTGAAGAGTCGGGAAACTGA
| Gene3D |
Ig-like_fold (IPR013783) - T[18-141] 5.5E-12 - T[248-339] 5.6E-20 - T[344-434] 6.1E-17 - T[447-533] 1.7E-16 - T[534-614] 9.9E-8 - T[615-712] 3.4E-16 - T[718-818] 7.3E-16 - T[819-915] 2.1E-20 - T[916-1020] 1.8E-15 - T[1021-1125] 3.2E-10 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[25-138] 9.029 - T[248-334] 13.294 - T[344-431] 11.025 - T[451-526] 10.444 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[31-142] 1.49E-6 - T[257-344] 4.75E-18 - T[337-434] 1.39E-14 - T[449-530] 1.88E-15 - T[538-621] 4.47E-11 |
| SMART |
Ig_sub (IPR003599) - T[39-142] 3.3 - T[152-238] 140.0 - T[257-338] 9.3E-9 - T[350-435] 1.4E-6 - T[444-528] 4.8E-8 - T[537-613] 0.0021 |
| Pfam |
Ig_I-set (IPR013098) - T[260-337] 6.0E-14 - T[450-527] 4.5E-13 |
| SMART |
Ig_sub2 (IPR003598) - T[263-327] 2.1E-13 - T[356-422] 2.8E-7 - T[450-517] 9.8E-12 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[614-819] 1.91E-23 - T[834-1015] 2.0E-33 - T[1018-1113] 1.67E-9 |
| SMART |
FN3_dom (IPR003961) - T[616-704] 5.9E-6 - T[722-805] 0.02 - T[820-904] 1.9E-11 - T[919-1005] 1.4E-8 - T[1018-1109] 5.8E-4 |
| CDD |
FN3_dom (IPR003961) - T[616-712] 9.22941E-13 - T[724-814] 1.69567E-8 - T[820-914] 3.06878E-13 - T[920-1015] 4.46625E-11 - T[1035-1118] 2.76445E-6 |
| Pfam |
FN3_dom (IPR003961) - T[617-706] 2.2E-9 - T[725-803] 1.4E-8 - T[833-907] 2.6E-12 - T[921-1005] 7.3E-11 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[618-719] 19.195 - T[721-818] 15.219 - T[820-917] 20.473 - T[921-1018] 18.075 - T[1020-1121] 11.424 |
| Pfam |
Neurofascin/L1/NrCAM_C (IPR026966) - T[1158-1252] 9.2E-14 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NRCAM_HUMAN | 28.85 % | 468 | 2.71E-143 |
| NCHL1_HUMAN | 27.245 % | 414 | 2.14E-124 |
| L1CAM_HUMAN | 28.003 % | 416 | 1.14E-124 |