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TRANSCRIPT CARD

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  1. Transcript 'Haaura.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S499.g05417.02.t

Possible name(s)

RAB18; RAB2A; RAB2B

Gene model

Haaura.CG.MTP2014.S499.g05417

Location

S499 [27,195 / 28,846]

Sequences

Amino acid sequence

Length: 218

>Haaura.CG.MTP2014.S499.g05417.02.p
LLSLKQNKKHCKMDEELLTTLKILIIGESGVGKSSLLLRFTDDKFDPDQPATIGVDFKVK
AITVDGNMVKLALWDTAGQERFRTLTPSYYRGAQGVIFVYDCTRADTFSRIGSWMTELET
YATKPNVVKMLVGNKIDKDGRLVQRDEGLKFARKHAMLFIEASAKTKDGVQCAFEELVEK
IIQTPGLWENDGQKSGGSFSVGGSSAQPQGMCGCSLI*

Nucleotide sequence

Length: 654

>Haaura.CG.MTP2014.S499.g05417.02.t
CTGCTCAGTCTGAAACAAAACAAAAAACATTGCAAAATGGACGAGGAATTACTAACTACG
TTGAAAATATTAATTATTGGCGAAAGCGGCGTTGGAAAATCAAGTTTGCTGCTGAGGTTC
ACAGATGACAAGTTTGACCCAGATCAGCCTGCAACTATTGGTGTCGATTTTAAGGTGAAA
GCTATCACCGTCGATGGTAACATGGTCAAGCTTGCATTGTGGGATACTGCAGGACAGGAA
AGGTTCAGAACTCTCACACCCAGCTACTATAGAGGAGCACAAGGCGTTATTTTTGTGTAT
GATTGCACCAGAGCTGACACTTTCTCCAGAATTGGCTCATGGATGACAGAATTGGAAACG
TATGCGACCAAACCGAATGTTGTCAAAATGCTTGTTGGAAACAAAATAGACAAGGACGGA
AGACTAGTCCAGAGAGACGAGGGTTTGAAATTTGCGCGGAAACATGCAATGCTTTTCATT
GAAGCCAGCGCAAAGACTAAAGACGGTGTCCAGTGTGCTTTTGAAGAACTTGTTGAAAAA
ATCATTCAGACCCCTGGCTTGTGGGAAAACGATGGACAGAAAAGCGGAGGCTCCTTTTCT
GTCGGAGGTTCGAGTGCACAGCCGCAGGGAATGTGTGGTTGTAGTTTAATATGA

InterProScan

SUPERFAMILY
P-loop_NTPase (IPR027417) - T[18-186] 4.07E-55
TIGRFAM
Small_GTP-bd_dom (IPR005225) - T[20-176] 1.1E-31
Pfam
Small_GTPase (IPR001806) - T[22-182] 1.3E-54
ProSitePatterns
Sigma_54_int_dom_ATP-bd_1 (IPR025662) - T[23-36] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RAB18_HUMAN 77.66 % 305 6.52E-107
RAB2A_HUMAN 46.961 % 170 2.8E-53
RAB2B_HUMAN 47 % 168 1.43E-52