- Transcript 'KH2012:KH.C1.1027.v1...' >
- Transcript 'Haaura.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S495.g05380.01.t
Possible name(s)
GRWD1; RBBP4; RBBP7
Gene model
Location
S495 [36,385 / 37,582]
Amino acid sequence
Length: 399
>Haaura.CG.MTP2014.S495.g05380.01.p
MSKIESTDYKIWKKNTPFLYDFLVTHSLEWPSLTVEWLPDLTRPETKDFSVHRLILGTHT
TEEQNHLIILDVPFPSPHAEFDATSYDSEKDEFGGYVAKSGKIETEIKINHDGEVNRARH
MPQIPCVIATKPPSSDVLVFDYTKHPSKPDASGKCNPDLRLKGHQKEGYGLSWNPNSTGL
LLSSSNDHTVCMWDVNGATKDNKNLTALNTFKGHTDIVEDVCWHCLHDSLFASVSDDRKL
MVWDSRSNSTEQPIHAIVAHGAEVNCVSFNPYNEYILATGSSDRTVNLWDLRKLDSNLHT
FRNHDDEVFQVHWSPHRENILASGSSDQKLNVWDVKRINKQGSEFKEKSSELLFSHRGHS
AKISDFSWNCNQPWTICSVGEDNIMQMWTIASNICKDD*
Nucleotide sequence
Length: 1,197
>Haaura.CG.MTP2014.S495.g05380.01.t
ATGTCCAAAATTGAGAGTACAGACTATAAAATATGGAAGAAAAACACGCCTTTCCTCTAC
GACTTTTTAGTGACTCATTCCTTAGAGTGGCCGAGCCTAACAGTTGAGTGGTTACCAGAT
CTTACCCGACCCGAAACCAAAGACTTTTCTGTTCATCGTCTTATACTTGGAACTCACACA
ACAGAAGAGCAAAATCACTTGATCATCTTGGATGTTCCATTTCCGAGCCCGCATGCTGAA
TTCGATGCAACCAGTTACGACAGCGAAAAGGATGAGTTCGGTGGATACGTCGCCAAGAGC
GGTAAGATCGAAACAGAAATCAAAATAAATCACGACGGCGAAGTCAACCGTGCCCGACAC
ATGCCTCAGATACCATGCGTCATTGCCACCAAACCACCTTCAAGCGACGTCTTGGTATTT
GATTATACAAAACACCCCAGTAAGCCAGATGCGAGCGGTAAATGCAACCCGGATCTACGA
TTGAAAGGCCACCAGAAAGAAGGTTATGGACTGTCATGGAATCCGAACAGCACCGGACTA
TTGCTGAGTTCTTCTAATGACCATACTGTATGCATGTGGGACGTCAACGGTGCCACTAAA
GATAACAAGAACTTAACAGCCTTGAACACTTTTAAAGGTCACACTGATATAGTTGAAGAT
GTGTGCTGGCATTGTCTCCATGATAGCTTGTTTGCCTCTGTCTCAGACGATCGCAAGTTG
ATGGTTTGGGATTCCAGATCAAATTCTACCGAGCAACCGATTCACGCGATTGTAGCTCAC
GGTGCAGAAGTGAACTGTGTCTCTTTCAACCCATACAATGAATATATCCTTGCTACCGGG
TCTTCGGATAGAACTGTAAATCTTTGGGATTTACGCAAGCTTGATTCGAATCTACATACA
TTTAGAAATCATGATGACGAAGTATTCCAAGTTCATTGGTCTCCGCACAGAGAAAATATT
TTGGCCTCGGGTAGCAGTGATCAAAAATTGAACGTATGGGACGTCAAAAGAATAAATAAA
CAAGGCAGTGAGTTCAAAGAGAAGTCTTCAGAACTCCTCTTTTCGCACAGAGGTCATTCC
GCAAAAATATCAGATTTTTCATGGAATTGTAATCAACCGTGGACGATATGCTCTGTTGGT
GAAGATAATATCATGCAGATGTGGACCATAGCCAGCAACATTTGTAAAGATGATTAA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-398] 1.3E-143 |
| Pfam |
Histone-bd_RBBP4_N (IPR022052) - T[9-75] 3.5E-25 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[100-388] 5.64E-52 |
| SMART |
WD40_repeat (IPR001680) - T[154-194] 3.1E-6 - T[204-244] 6.3E-7 - T[250-290] 7.7E-10 - T[294-334] 7.9E-8 - T[349-389] 0.011 |
| Pfam |
WD40_repeat (IPR001680) - T[161-194] 0.025 - T[208-244] 5.7E-4 - T[252-290] 1.7E-7 - T[296-334] 4.2E-4 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[161-203] 11.778 - T[211-253] 10.241 - T[257-292] 13.683 - T[301-336] 13.516 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[161-398] 35.752 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[181-195] 1.1E-8 - T[277-291] 1.1E-8 - T[321-335] 1.1E-8 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[181-195] . - T[277-291] . - T[321-335] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GRWD1_HUMAN | 26.984 % | 105 | 6.53E-25 |
| RBBP7_HUMAN | 63.819 % | 556 | 0 |
| RBBP4_HUMAN | 66.08 % | 578 | 0 |