- Transcript 'Phmamm.CG.MTP2014.S6...' >
- Transcript 'Haaura.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S422.g04968.01.t
Possible name(s)
SMIM20; SRP72
Gene model
Location
S422 [46,052 / 51,181]
Amino acid sequence
Length: 781
>Haaura.CG.MTP2014.S422.g04968.01.p
KKIVELYFDLFLIVKSDFCLLSLCTCIICRRQLAHDICTDVLYFVQCLCLYIPSKYNRPI
SSDITIMSSTTSPLTGMFAELNKTLQVNDYKQALKLCNKIIHSKEGNTDEKAMHCKVVCM
INLNQFAEVLKFIKSTPEISSSLIFEKAYSQYRLIQTDEALETIKEAKELDVRLMELKAQ
VLYKLGYYDESFELYKRLIKECSDDYEDERKSNLIAVHASNTLWKKKQQGDVELELTSYE
QMYNKSCKLLGDGNAAGAAGLLEDALENCKAYYEDDSDMTEEDIEGEVAVIKVQMGYALQ
LQGKEDEALQLYNQVIKSRPDDIGLVAVASNNIITINREQNVFDSKKKLKATMVQGLRQK
LVLKQLIVIDMNRALLYLYSNQWEMCKKVLKSLQQENKSDDVPCLIQAVQLCREKNYEKA
ISFLEDFIETHSDPDVHSIDLANIKLALVQILLGQGKVERVCAILESMHEIKYTPGIMSI
LVALHDSRKGGEMKAIQILNEAIAWHIDNQTSNEIIVKLLWESACYKLNKKHPKQAAENL
EQMRRLDPKNVTVLAQLIFAYSQFNCSKAHQISEALPSLEEMSVAVNVEQLEADGPSVLA
PRFLKRQQKQQKKLLEKKQEENSRAKGDVKKEDLRRAKETVSEVKIDPLLVKKGKKKRKK
RKLPKNMDPGVEPDPERWIPLRERSYYKGRRKDRRKNVTKGTQGSSTMSSEYLDMSAKVQ
TPAQAPGSPGSSGSTPASPRPGSVPLKQPPLNSPKPSTGARPKSKQTARGKKKKGGKGGW
*
Nucleotide sequence
Length: 2,343
>Haaura.CG.MTP2014.S422.g04968.01.t
AAAAAGATCGTGGAACTCTACTTTGACCTGTTTCTTATTGTAAAATCTGATTTTTGTTTG
TTGAGCTTGTGTACCTGCATTATATGCAGACGACAACTTGCTCATGATATTTGTACAGAT
GTCTTGTATTTTGTCCAATGTCTCTGTTTGTATATTCCAAGTAAATATAATCGACCTATC
TCATCTGACATCACGATCATGTCATCAACGACATCTCCTCTGACTGGGATGTTCGCTGAG
TTGAACAAAACTCTTCAAGTCAACGATTACAAGCAAGCGTTGAAATTATGCAACAAAATA
ATTCATTCGAAAGAAGGAAACACAGACGAGAAAGCAATGCATTGTAAAGTTGTCTGTATG
ATAAACTTGAACCAGTTTGCAGAAGTGTTAAAGTTCATCAAATCCACGCCTGAAATCTCA
TCATCTCTGATTTTCGAAAAAGCATATTCTCAATACAGACTCATCCAGACAGACGAGGCG
CTAGAGACAATCAAGGAAGCCAAGGAACTCGACGTGCGGCTGATGGAACTTAAAGCACAA
GTTCTTTATAAGCTCGGCTATTACGACGAATCTTTCGAACTTTATAAACGGCTTATCAAA
GAATGTTCTGACGATTACGAAGACGAGAGAAAGTCGAATCTGATCGCTGTTCATGCGTCG
AATACGTTGTGGAAAAAGAAGCAGCAAGGTGACGTAGAACTGGAACTGACGTCGTACGAA
CAAATGTACAATAAGTCCTGCAAACTGCTTGGAGATGGGAATGCTGCGGGGGCCGCTGGG
TTACTTGAAGATGCATTGGAAAATTGCAAAGCTTATTATGAGGATGACTCGGATATGACA
GAGGAAGATATAGAAGGTGAAGTTGCTGTTATCAAGGTTCAAATGGGATATGCATTGCAA
CTACAAGGAAAGGAGGACGAAGCGTTACAGCTTTATAATCAGGTTATAAAGTCGAGGCCG
GATGATATTGGACTTGTTGCAGTCGCTTCCAATAACATCATCACGATTAATAGGGAACAA
AATGTGTTCGATTCGAAAAAGAAGCTGAAAGCGACGATGGTTCAAGGTCTTCGACAGAAA
CTCGTCCTGAAACAGCTGATCGTAATCGATATGAATCGTGCTCTACTTTATCTCTATTCT
AACCAGTGGGAAATGTGCAAAAAAGTTTTAAAATCTCTGCAACAAGAGAACAAGTCTGAC
GACGTTCCGTGCCTTATCCAAGCGGTTCAGTTATGTCGAGAGAAAAATTACGAGAAAGCG
ATTTCGTTCCTTGAGGATTTTATAGAAACGCATTCGGACCCGGACGTACATTCTATCGAC
CTCGCTAATATCAAACTCGCTCTCGTACAGATATTGCTCGGACAGGGGAAGGTGGAAAGG
GTGTGTGCCATTCTCGAAAGCATGCATGAAATCAAGTACACTCCTGGGATCATGTCGATA
TTGGTGGCGCTTCACGACTCTAGAAAAGGCGGCGAAATGAAAGCGATACAAATATTGAAT
GAGGCAATCGCTTGGCATATCGATAACCAAACTTCGAATGAAATCATCGTCAAGCTGCTG
TGGGAAAGCGCCTGCTACAAACTCAACAAAAAACATCCGAAACAAGCCGCTGAAAATTTG
GAACAAATGAGAAGGCTCGACCCAAAAAATGTCACAGTCTTGGCGCAACTTATTTTCGCT
TATTCGCAGTTTAATTGCTCGAAGGCTCACCAGATAAGCGAGGCCTTGCCTTCATTGGAA
GAAATGTCGGTTGCCGTTAATGTAGAGCAGCTGGAAGCAGACGGGCCAAGCGTTCTCGCA
CCGAGGTTCTTGAAACGTCAACAGAAACAGCAGAAAAAACTGCTCGAGAAGAAACAAGAG
GAAAATTCACGAGCGAAAGGAGACGTCAAAAAAGAAGACCTTCGCAGGGCTAAGGAGACA
GTTTCGGAAGTCAAAATCGATCCTCTGCTCGTGAAAAAAGGAAAAAAGAAGCGGAAAAAA
CGTAAGCTTCCAAAAAATATGGACCCCGGTGTCGAACCCGACCCAGAACGATGGATCCCC
TTAAGAGAACGATCGTATTACAAAGGTAGAAGAAAAGATAGGAGGAAAAATGTGACGAAA
GGAACGCAAGGTTCCTCCACTATGTCGAGTGAATATCTCGATATGTCTGCAAAGGTACAG
ACACCGGCTCAAGCACCAGGTTCGCCAGGATCTTCTGGGTCCACACCCGCATCACCCAGA
CCCGGGTCCGTACCTCTGAAACAGCCTCCGCTGAACTCGCCTAAACCGTCGACCGGGGCT
CGGCCCAAATCGAAACAAACTGCCAGAGGGAAAAAGAAAAAGGGGGGTAAGGGGGGCTGG
TGA
| PANTHER |
SRP72 (IPR026270) - T[68-777] 2.5E-190 |
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[74-231] 2.0E-45 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[84-111] 1.46E-13 - T[143-205] 1.46E-13 - T[289-325] 1.46E-13 - T[294-350] 2.73E-8 - T[383-430] 1.46E-13 - T[415-456] 2.73E-8 - T[523-564] 2.73E-8 |
| Pfam |
SRP_TPR-like (IPR031545) - T[93-219] 1.0E-21 |
| ProSiteProfiles |
TPR_repeat (IPR019734) - T[172-205] 6.048 - T[289-322] 9.204 - T[517-550] 5.104 |
| SMART |
TPR_repeat (IPR019734) - T[172-205] 69.0 - T[289-322] 0.046 - T[517-550] 480.0 |
| ProSiteProfiles |
TPR-contain_dom (IPR013026) - T[172-205] 6.97 - T[289-322] 10.035 |
| Pfam |
TPR_repeat (IPR019734) - T[294-321] 0.0034 |
| Pfam |
Signal_recog_part_SRP72_RNA-bd (IPR013699) - T[618-689] 1.9E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SRP72_HUMAN | 40.996 % | 459 | 5.66E-152 |