Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 696

>Haaura.CG.MTP2014.S3.g00131.01.p
MKQHSFLASNGGGNKASIGSSHQHGVSRGSSRANSVISNKSVSSKSVNSPEHIISSPKMA
SNRPRVPSMPYTDQRYRPGAMTPQNPHPTDMLTDRRLLRSSPSVVRRHSKSSITRVDGGF
ILGSGRPPINAGKIPDQIKVQSGSKHGSLSRSHHNELFSRSSRTGSALSSSSTLSRTSYR
SPVSDEEIPLMFAEPPPIQLMCKICNRVYKDPTIMSCGHSYCKACSMSLELCPVDGKSMT
AMIENIVVREQVGSLFVHCRLGVRLSDLSGEYEIDPNGCPFTIKLAERRKHESECEYAPV
TCPNNPACPPMLKRHLQEHLETCKHMKCPNHKFGCLFIGDQDSCTDHVKTCKFEMAKDFL
QLTQDRINELTLDMRQRDEENSFLRSMLSKTADRLDEMEKAYEIKIEVLTLNQNKLTDEL
LQMRQDTAIISNELQDLNTKLNMGAIGMYDPQQIFKCKGTFVGHSGPVWCLYVHGDLLFS
GSSDKNIKVWDISKLEEVNSVVAHENAVCTLVCSYNMLFSGSLKNIKVWTIEDSKLILRQ
ELKGLNHWVRALVASQNYIYSGCYQTIQIWDVRTLECVRVLETSGGSVYSIAVTNHHVLC
GTYENVIHVWDVGNYDQVATLTGHVGTIYSLSVLSTPDQTKVFSASYDRSLRVWSMDNMI
CTQTLIRHQGSVTSLAVSRGRVFSGAVDSTVKVWQ*

Nucleotide sequence

Length: 2,088

>Haaura.CG.MTP2014.S3.g00131.01.t
ATGAAGCAGCACAGTTTTTTAGCAAGCAATGGTGGTGGAAATAAAGCTTCTATTGGATCA
TCACATCAACACGGCGTGTCTCGAGGTAGTTCCAGAGCGAATTCTGTGATCTCAAACAAA
TCTGTTTCGTCTAAATCCGTCAACTCTCCAGAACATATCATATCCTCGCCCAAAATGGCA
TCAAACCGACCCCGCGTACCGTCGATGCCGTACACGGACCAGAGATACCGTCCTGGGGCG
ATGACTCCGCAGAACCCTCATCCTACAGATATGTTGACAGACAGACGACTGCTAAGATCA
AGTCCGTCTGTTGTCCGGCGTCATTCTAAATCTTCCATCACAAGAGTCGATGGAGGATTC
ATATTGGGGTCAGGAAGACCTCCAATAAATGCTGGAAAAATTCCAGATCAAATCAAGGTT
CAAAGTGGCAGCAAACATGGCAGTTTGTCTCGCAGTCACCATAACGAGTTGTTTTCACGA
TCGTCCCGGACCGGCTCTGCATTATCCTCGTCATCCACACTCTCCCGAACTTCTTATAGA
TCGCCCGTTTCCGATGAAGAGATCCCACTCATGTTTGCCGAGCCCCCTCCGATTCAACTG
ATGTGCAAGATATGTAACAGAGTTTACAAAGATCCAACAATTATGTCATGTGGTCACTCA
TATTGCAAAGCATGCAGTATGTCTTTGGAATTGTGTCCCGTTGATGGGAAAAGTATGACA
GCCATGATCGAAAACATTGTGGTCAGAGAGCAAGTTGGGTCTTTATTCGTTCACTGCAGG
CTCGGTGTAAGATTGTCTGATTTATCGGGAGAATATGAGATCGATCCGAATGGTTGTCCT
TTCACTATCAAGCTGGCAGAGAGAAGAAAGCATGAATCGGAATGCGAGTACGCCCCAGTT
ACGTGCCCCAACAACCCAGCTTGCCCACCTATGTTGAAAAGACACTTGCAAGAACATTTA
GAAACCTGCAAGCACATGAAATGTCCCAATCATAAATTCGGATGCCTTTTCATTGGCGAC
CAAGACAGTTGTACCGATCATGTTAAAACTTGCAAGTTTGAGATGGCAAAGGACTTTCTT
CAGCTGACCCAGGATAGAATCAATGAATTAACTTTAGATATGAGACAAAGAGATGAAGAA
AATAGTTTCCTCAGATCTATGTTGTCAAAAACTGCAGACAGATTGGATGAAATGGAAAAA
GCATATGAAATAAAAATAGAGGTTTTGACACTAAACCAGAACAAACTCACGGACGAGCTA
CTGCAAATGAGACAAGACACTGCCATTATATCAAATGAATTACAGGATCTCAATACAAAA
TTGAATATGGGTGCAATAGGAATGTACGATCCGCAACAAATTTTCAAATGCAAAGGAACT
TTTGTCGGACACAGTGGTCCGGTCTGGTGTCTATACGTGCATGGAGATCTCCTGTTTAGT
GGTTCTTCGGATAAAAATATTAAAGTATGGGACATCAGTAAATTAGAGGAAGTCAATTCC
GTAGTGGCTCATGAAAATGCAGTGTGCACTTTAGTTTGCTCTTACAACATGCTATTCAGT
GGATCTTTGAAAAACATCAAGGTGTGGACTATCGAAGATTCCAAATTAATTCTCAGACAA
GAATTGAAAGGTTTGAACCACTGGGTTCGAGCTCTGGTAGCTTCACAAAATTACATTTAC
AGTGGCTGCTATCAGACAATACAGATATGGGATGTACGTACACTAGAATGTGTCAGAGTT
CTGGAGACATCAGGAGGAAGTGTGTACTCGATTGCTGTAACTAACCATCATGTCTTGTGT
GGTACATATGAGAATGTTATACACGTTTGGGATGTTGGAAATTATGACCAAGTTGCTACC
TTGACCGGACATGTCGGCACAATCTACTCTCTTTCTGTATTGAGCACGCCTGACCAAACC
AAGGTGTTCAGTGCTTCGTACGATCGCTCTTTGAGGGTTTGGAGCATGGACAATATGATT
TGTACACAAACACTAATCAGACATCAGGGTAGTGTTACTTCACTTGCCGTCTCCAGGGGC
AGAGTATTTTCAGGCGCTGTTGATTCCACTGTTAAAGTGTGGCAGTAA

InterProScan

Gene3D	Znf_RING/FYVE/PHD (IPR013083) - T[198-246] 2.1E-8 - T[273-320] 2.8E-6
SMART	Znf_RING (IPR001841) - T[202-235] 7.8E-5
Pfam	Znf-RING_LisH (IPR027370) - T[202-226] 4.0E-6
ProSiteProfiles	Znf_RING (IPR001841) - T[202-235] 10.748
SUPERFAMILY	TRAF-like (IPR008974) - T[254-324] 1.05E-9
ProSiteProfiles	Znf_TRAF (IPR001293) - T[291-361] 9.602
Gene3D	WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[439-514] 2.0E-11 - T[523-695] 5.4E-38
SUPERFAMILY	WD40_repeat_dom_sf (IPR036322) - T[447-695] 4.35E-57
SMART	WD40_repeat (IPR001680) - T[454-491] 2.5E-8 - T[494-530] 2.1 - T[535-571] 7.1 - T[574-611] 0.069 - T[614-655] 2.6E-4 - T[658-695] 1.9E-4
Pfam	WD40_repeat (IPR001680) - T[456-491] 2.9E-6 - T[617-655] 2.5E-4 - T[661-694] 0.013
ProSiteProfiles	WD40_repeat (IPR001680) - T[461-500] 12.948 - T[621-664] 10.308 - T[665-695] 11.377
ProSiteProfiles	WD40_repeat_dom (IPR017986) - T[461-695] 38.546
ProSitePatterns	WD40_repeat_CS (IPR019775) - T[478-492] .
PRINTS	G-protein_beta_WD-40_rep (IPR020472) - T[478-492] 5.8E-6 - T[642-656] 5.8E-6 - T[682-695] 5.8E-6