- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Phfumi.CG.MTP2014.S2...' >
- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Haaura.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S39.g01023.01.t
Possible name(s)
DNA2; IGHMBP2; UPF1
Gene model
Location
S39 [94,370 / 97,475]
Amino acid sequence
Length: 1,035
>Haaura.CG.MTP2014.S39.g01023.01.p
MEEFVDLHSELLKEEHQAEKQESDHMRQSMPLKEMQNRGICISKMHIISLKTGLYGRTII
KLGLRNQNPLKSNVFSSGDIVDLIKQSNDLSSKPELQGVVISVKQSSISIALDGDEVQSK
ADDLKTSDQNLNIFKTANQVTYQRLKKGLDRLKHHSGRSSGLIDVCFNSSKPTKYSNTPK
VEKFLNPLLNDSQKEAVNFALSQRQLAIVHGPPGTGKTTTIVELISQLVINGQKVLTCAP
SNVAVDNILEKLSNVKVAKLSSINANPSTVKVLRIGHPARIHSTNLHRMTLDAVIARSDS
AGIVRDIRKDIDDLYCKFRKKHKKEENFKLRAEKKILMKELRDREKKAIKEILSSADVVL
ATNVGSHSDGPLKHLPPDHFDVVVIDECGQALEASCWIPMLYAPKCILAGDHLQLPPTVK
SHTAAAKGLSKSLLERVTKLHDDEVVRMLNIQYRMHEKIMSWSSDNMYKSQLKAHPSVEA
HLLSDLDAIDETDETITPLVFIDTAGCDMPEHQTSENDSTGNPGEAKVVASHVCSLIAAG
VDPKDIAVISPYNLQVEILRKLLHPEYPGLEIRSVDGFQGREKEAVVLSMVRSNDKGIVG
FLSDDRRTNVAVTRARRHLALICDSQTVGKHDFLKTLIDHMHEYGEVKSAHSIVEDEESA
NQIHFDPSPFLLHRKSEKEKRGKETIQEKVKADLDVIKNKFREILLKFKERAGLDSSTTV
EYEFPSTLKGNERLAIHELCEELGLGHCSTGEGNARKIIISTVLNNPGPTKQITDLFVPK
SCKKDEETKPLEIVPPAIKLTKDQSYKKDADPNSLSLKKIPQEIPHAASQSTEIIQKTDS
SLDKDHEVDSQSITIEKNFVDNVACTLCGKQIHRENLPLHQIHCERLQAMKNKFTAAKSV
STATSKKKAQKTKKKKTQKEISGMNDDELLDEAIKTNKLCSYSNCNQTVTLVGQTCRNCG
RLYCLEHHIPEIHGCGAAAHSAARQQISRDGILFRGSGVPSKKPSVEKHAQLHRKLEGKL
KDMSTSRTGEKKKK*
Nucleotide sequence
Length: 3,105
>Haaura.CG.MTP2014.S39.g01023.01.t
ATGGAAGAATTCGTTGACCTGCATTCAGAGCTTCTGAAGGAAGAACACCAGGCTGAAAAA
CAAGAATCTGATCACATGCGGCAGTCAATGCCGCTTAAAGAAATGCAAAATCGAGGAATT
TGTATCTCGAAAATGCACATTATATCATTGAAAACTGGCTTGTATGGCAGAACTATCATT
AAACTCGGATTAAGGAATCAAAACCCATTAAAATCCAATGTTTTTTCTTCTGGAGACATT
GTCGATCTAATAAAACAATCTAACGACCTTTCGTCAAAACCAGAACTTCAAGGTGTTGTT
ATATCTGTTAAGCAGAGTTCCATCAGCATCGCACTAGATGGAGATGAAGTTCAATCAAAA
GCTGATGACTTAAAAACAAGTGATCAGAATTTAAACATATTTAAAACCGCGAATCAAGTG
ACATATCAACGCTTGAAAAAGGGTCTGGATCGATTGAAACATCATTCGGGCCGTTCTTCA
GGATTGATTGATGTGTGTTTCAATAGCAGCAAGCCAACAAAGTACAGCAACACTCCGAAA
GTTGAGAAGTTTTTAAATCCATTATTAAATGACTCTCAGAAAGAAGCAGTTAACTTTGCA
CTGTCACAGCGCCAACTAGCCATTGTTCACGGTCCACCAGGCACAGGTAAAACAACAACC
ATCGTAGAACTCATCTCACAACTTGTAATCAATGGCCAAAAAGTATTAACCTGTGCTCCG
TCAAATGTTGCCGTCGATAATATTCTAGAAAAGTTATCGAATGTCAAAGTCGCCAAATTG
TCATCTATAAATGCTAATCCCTCTACAGTGAAGGTATTGAGAATAGGTCATCCAGCTAGA
ATACATTCAACCAATCTTCACAGGATGACGTTGGATGCTGTCATTGCTAGAAGTGACTCT
GCTGGCATCGTCCGTGACATACGCAAAGACATCGATGACTTGTATTGTAAGTTTCGCAAG
AAGCACAAAAAGGAAGAAAACTTTAAATTGAGAGCGGAAAAAAAGATTCTCATGAAAGAA
TTGAGGGACAGAGAGAAGAAAGCCATCAAGGAAATTCTGTCCTCTGCAGATGTTGTACTG
GCTACTAATGTAGGATCTCACAGCGATGGACCGTTGAAGCATTTACCCCCTGATCATTTC
GATGTTGTAGTTATTGATGAATGCGGTCAAGCTCTGGAAGCTTCCTGTTGGATTCCTATG
TTATATGCTCCCAAATGCATCTTGGCTGGAGACCATCTTCAACTTCCTCCTACAGTAAAA
TCCCATACTGCTGCTGCTAAAGGTCTTTCAAAATCTCTTCTGGAAAGAGTGACCAAACTG
CACGATGATGAAGTTGTTCGGATGCTGAATATACAATACAGAATGCATGAAAAGATCATG
TCATGGTCATCAGATAATATGTATAAATCACAACTGAAAGCTCATCCTTCAGTTGAAGCT
CATCTCTTGTCTGATCTTGATGCCATTGATGAGACTGACGAAACTATAACACCATTGGTT
TTTATTGATACTGCCGGATGTGACATGCCAGAACATCAGACATCAGAGAATGATTCAACA
GGTAATCCAGGTGAGGCGAAGGTCGTCGCAAGCCATGTTTGCAGCCTGATTGCCGCAGGA
GTAGATCCAAAAGACATTGCTGTAATATCGCCTTACAATCTCCAGGTTGAAATACTCCGT
AAACTACTTCATCCCGAATATCCTGGTCTGGAAATAAGATCAGTGGATGGCTTTCAAGGA
CGTGAAAAGGAAGCGGTTGTCTTGTCCATGGTGCGCTCTAATGACAAAGGTATAGTAGGT
TTTCTTTCTGATGACAGGAGAACTAACGTGGCCGTTACACGTGCACGTCGGCATTTGGCT
TTGATTTGTGATTCGCAGACTGTTGGGAAACATGACTTCCTAAAAACCCTCATTGACCAT
ATGCATGAGTATGGCGAGGTTAAGTCAGCTCACAGCATTGTTGAAGATGAAGAATCTGCT
AACCAAATACATTTCGACCCCTCTCCATTTTTGTTACATCGTAAAAGTGAGAAAGAGAAA
AGGGGGAAGGAAACTATTCAAGAAAAAGTAAAAGCGGATTTGGACGTAATTAAAAATAAA
TTTAGAGAGATTTTGCTGAAATTTAAAGAAAGAGCTGGCCTTGACTCGAGTACTACTGTG
GAATACGAGTTTCCATCAACTCTCAAAGGCAATGAGCGTCTTGCTATTCACGAACTTTGT
GAAGAGTTGGGTCTGGGACATTGTAGCACTGGTGAAGGAAACGCAAGAAAAATAATAATA
TCAACGGTTCTTAACAATCCTGGGCCAACTAAACAAATCACAGATCTATTCGTGCCAAAG
TCATGTAAAAAGGATGAAGAAACTAAACCTTTAGAAATTGTGCCTCCAGCAATCAAACTC
ACTAAGGACCAATCCTACAAGAAGGATGCTGATCCTAATTCTCTGAGCCTGAAGAAAATC
CCTCAAGAGATTCCTCATGCTGCATCCCAGAGTACAGAAATCATACAGAAGACTGACAGC
TCTCTAGATAAAGATCATGAGGTTGATTCTCAATCAATAACCATTGAGAAAAACTTTGTC
GACAATGTCGCATGTACACTATGCGGCAAGCAAATACATAGAGAAAACCTCCCATTGCAT
CAAATTCATTGCGAGAGATTGCAAGCAATGAAGAACAAATTTACAGCGGCCAAAAGTGTT
TCTACTGCCACCAGCAAGAAAAAGGCGCAAAAGACTAAAAAGAAAAAAACTCAAAAAGAG
ATCAGTGGTATGAATGATGATGAATTACTTGATGAGGCAATCAAAACAAACAAATTATGT
TCTTACTCCAATTGCAATCAGACAGTGACTTTGGTGGGTCAAACTTGCCGCAACTGTGGT
AGACTGTATTGTCTGGAGCATCATATCCCAGAAATCCATGGTTGTGGTGCTGCGGCCCAC
TCTGCCGCTCGTCAACAGATCAGTCGGGATGGAATACTGTTCCGTGGTAGTGGTGTTCCT
AGCAAGAAACCATCAGTTGAAAAGCATGCTCAACTACACAGAAAGTTGGAAGGAAAATTG
AAAGATATGAGCACAAGCAGAACAGGTGAAAAGAAAAAGAAATAA
| TIGRFAM |
SMUBP-2/Hcs1-like (IPR004483) - T[15-651] 9.6E-191 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[185-454] 0.0013 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[188-653] 2.03E-70 |
| SMART |
AAA+_ATPase (IPR003593) - T[203-562] 9.8E-4 |
| Gene3D |
R3H_dom_sf (IPR036867) - T[681-765] 2.6E-13 |
| SMART |
R3H_dom (IPR001374) - T[685-763] 3.9E-6 |
| ProSiteProfiles |
R3H_dom (IPR001374) - T[695-764] 11.463 |
| Pfam |
R3H_dom (IPR001374) - T[702-761] 1.1E-7 |
| SUPERFAMILY |
R3H_dom_sf (IPR036867) - T[715-761] 1.45E-7 |
| SUPERFAMILY |
AN1-like_Znf (IPR035896) - T[928-993] 9.68E-14 |
| Gene3D |
AN1-like_Znf (IPR035896) - T[929-991] 3.0E-9 |
| ProSiteProfiles |
Znf_AN1 (IPR000058) - T[937-991] 8.501 |
| Pfam |
Znf_AN1 (IPR000058) - T[940-978] 1.8E-9 |
| SMART |
Znf_AN1 (IPR000058) - T[940-980] 4.9E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RENT1_HUMAN | 33.047 % | 197 | 1.16E-51 |
| SMBP2_HUMAN | 44.725 % | 684 | 0 |
| DNA2_HUMAN | 29.114 % | 177 | 2.53E-45 |