- Region 'REG00000441' >
- Transcript 'Haaura.CG.MTP2014.S4...' >
- Transcript 'Harore.CG.MTP2014.S4...' >
- Transcript 'KH2012:KH.C9.653.v1....' >
- Transcript 'Haaura.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S336.g04399.01.t
Possible name(s)
SIX1; SIX2; SIX4
Gene model
Location
S336 [24,503 / 27,793]
Amino acid sequence
Length: 448
>Haaura.CG.MTP2014.S336.g04399.01.p
MAAALAVSSYTTVLPQVVQHHPAAAAAAAAAAAAQLSAVTSAGQNVHLSSGHMASHSGMS
LLPAAPPTSLSFGFTQEQVACVCEVLQQGGNIERLARFLWSLPACEHLHKNESVLKAKAV
VAFHRGNFRELYKLLESHNFSPHNHPKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKF
PLPRCIWDGEETSYCFKEKSRAALREWYAHNPYPSPREKRELAEATGLTVTQVSNWFKNR
RQRDRAAEAKERDGSEAGMSGGISGDGMVTPPHQGGMEGPASVGHVGSNHGDMMEQKPGL
EGSMHPHHQQLPPHVQQQIMQHHSDQMVQQQVHHQQHSHTPPQAHHHYPQGPSPTSIPNS
MIMGTMQDPHSVQHNLHSAAMSGHYTMASSAHASHGMQQQHVPDMHFQQQSHIPHHHQAA
AIHNPSVPLHESMMHHPMTTTMLDMGS*
Nucleotide sequence
Length: 1,344
>Haaura.CG.MTP2014.S336.g04399.01.t
ATGGCAGCTGCACTTGCTGTCAGTTCCTATACGACCGTTTTACCACAGGTCGTACAGCAT
CATCCTGCAGCGGCAGCGGCTGCGGCGGCTGCAGCGGCGGCCCAGCTATCGGCGGTAACT
TCCGCGGGACAAAACGTGCACTTATCATCGGGACATATGGCATCGCACTCTGGTATGTCT
TTGCTACCGGCAGCTCCACCGACCTCTCTTTCATTCGGTTTCACGCAGGAACAAGTCGCT
TGCGTTTGTGAAGTTTTACAACAAGGCGGTAATATTGAACGTTTAGCAAGATTCCTATGG
TCTCTGCCCGCTTGCGAGCATCTACATAAGAACGAAAGCGTACTGAAAGCCAAAGCCGTC
GTCGCTTTTCATCGCGGAAATTTTCGCGAACTTTATAAATTACTAGAAAGTCACAACTTC
TCTCCGCATAATCATCCTAAACTCCAACAGCTTTGGTTGAAAGCCCACTACATCGAGGCG
GAGAAGCTACGAGGAAGACCGCTTGGTGCAGTCGGAAAATATCGCGTGAGAAGGAAATTT
CCTTTGCCAAGATGCATCTGGGACGGCGAAGAAACAAGCTATTGTTTCAAAGAAAAATCG
CGAGCGGCTCTTAGAGAATGGTACGCTCACAATCCTTATCCTTCGCCGAGGGAAAAGAGG
GAATTAGCTGAGGCTACTGGACTCACAGTCACACAAGTTAGCAACTGGTTCAAAAACAGA
AGACAGCGCGACAGGGCGGCTGAAGCCAAAGAAAGAGATGGCAGCGAAGCTGGGATGTCA
GGGGGTATTAGTGGAGACGGTATGGTAACTCCGCCACATCAGGGAGGAATGGAAGGCCCG
GCGTCTGTGGGACACGTCGGTTCGAATCACGGCGACATGATGGAACAAAAACCGGGACTT
GAAGGTAGCATGCATCCTCACCACCAACAACTTCCACCCCACGTACAGCAACAAATAATG
CAACATCATTCTGATCAAATGGTCCAGCAACAAGTTCACCATCAACAACACTCTCACACC
CCGCCACAGGCTCATCACCATTACCCGCAAGGACCCTCACCGACGTCGATTCCGAACAGT
ATGATCATGGGTACGATGCAGGATCCACATTCGGTCCAGCATAATTTACATTCGGCTGCA
ATGTCAGGTCATTATACCATGGCCAGTTCGGCCCATGCATCGCACGGTATGCAACAACAA
CATGTTCCTGATATGCATTTCCAGCAACAATCACACATACCCCACCATCATCAAGCCGCC
GCGATACACAATCCGTCTGTACCACTGCACGAGTCTATGATGCATCATCCAATGACGACA
ACCATGCTAGATATGGGATCTTAA
| PANTHER |
SIX1 (IPR031278) - T[71-262] 1.4E-130 - T[391-399] 1.4E-130 |
| Pfam |
SIX1_SD (IPR031701) - T[74-184] 3.6E-49 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[187-250] 3.34E-18 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[187-247] 15.224 |
| SMART |
Homeobox_dom (IPR001356) - T[190-251] 7.8E-18 |
| CDD |
Homeobox_dom (IPR001356) - T[194-245] 4.26362E-19 |
| Pfam |
Homeobox_dom (IPR001356) - T[195-245] 7.2E-14 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[222-245] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SIX4_HUMAN | 71.264 % | 285 | 1.28E-88 |
| SIX1_HUMAN | 89.394 % | 384 | 3.58E-133 |
| SIX2_HUMAN | 91.146 % | 374 | 8.52E-129 |