- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.S988.2.v2....' >
- Transcript 'Boleac.CG.SB_v3.S526...' >
- Transcript 'Haaura.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S3270.g10180.01.t
Possible name(s)
PRDM1; ZNF652; ZSCAN5B
Gene model
Location
S3270 [1,297 / 2,834]
Amino acid sequence
Length: 140
>Haaura.CG.MTP2014.S3270.g10180.01.p
MVQHTGDKPFTCKICAKTFAYVVSARKHTLVHTSKNPSMCTACDKEFADVSELKLHMKIH
IVEKPFTCGICDKKFSHKEYLGLHIKTHESKKPFECTVCNKQFWERFQVKQHMVGLQQKL
CSSLRCQTTHRNSHRRETV*
Nucleotide sequence
Length: 604
>Haaura.CG.MTP2014.S3270.g10180.01.t
ATGGTCCAACATACCGGCGATAAACCGTTCACATGTAAGATTTGTGCCAAGACGTTTGCA
TATGTGGTAAGCGCACGGAAACATACTCTGGTCCACACGAGTAAAAATCCTTCGATGTGC
ACAGCTTGTGATAAAGAATTCGCAGATGTGAGCGAACTTAAACTACACATGAAAATACAC
ATCGTCGAAAAACCATTCACATGTGGCATATGTGACAAGAAATTTTCACACAAGGAATAC
TTGGGATTACACATAAAAACACACGAGAGCAAAAAACCGTTCGAGTGTACGGTATGCAAT
AAACAATTCTGGGAACGATTTCAAGTGAAGCAGCACATGGTAGGTTTGCAGCAAAAACTT
TGCTCGTCTCTGCGCTGTCAAACAACACATAGAAACTCACACAGGAGAGAGACCGTATGA
ATGTATGAAGTGTGATAAAAGATTTCAACGCAATTCTCATTTGATTCGACATTTCCTTGT
CCACACCAAAGAAAAAGCTTTCAAATGCATGGTTTGTTCGAGCGCGTTTTCGCAAGCTGA
TCATCTAAGAACCCACATGAAAGTACACACGGGCTTTGCGACGTCACATACACATGGTTC
ACGG
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[4-56] 4.47E-15 - T[47-103] 1.1E-17 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[10-37] 12.009 - T[38-65] 12.778 - T[66-93] 13.297 |
| SMART |
Znf_C2H2_type (IPR013087) - T[10-32] 0.53 - T[38-60] 0.027 - T[66-88] 0.009 - T[94-114] 27.0 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[12-32] . - T[40-60] . - T[68-88] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZSA5B_HUMAN | 44.545 % | 104 | 4.43E-27 |
| PRDM1_HUMAN | 37.5 % | 103 | 1.76E-26 |
| ZN652_HUMAN | 43.75 % | 102 | 3.92E-26 |