- Transcript 'KH2012:KH.C2.36.v3.A...' >
- Transcript 'KH2012:KH.C2.36.v2.A...' >
- Transcript 'Boleac.CG.SB_v3.S206...' >
- Transcript 'Haaura.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S319.g04259.01.t
Possible name(s)
LRP1B; LRP2; SORL1
Gene model
Location
S319 [11,092 / 12,848]
Amino acid sequence
Length: 466
>Haaura.CG.MTP2014.S319.g04259.01.p
MELGKSSLLFLLFYFNFGQVGGLSSCVDGQFTCSNYRCLNGTQVCDHIDSCGDGSDEIFC
KNKTDNCWSWQTNCTGGKCEDDTFQCNNGKCIPLNVACNRMDNCGDGSDEIRNRKGFKCP
FGGGGDVCVLPQRHVNDNFLHCSTNRDLCSEGQSKCFTCFDRMFKISLTQQCDGIFDCSD
LSDECPCENNTHDVCLNICGLQGTKANCTKGTYSCDNQLTELRKMTICDGIADCADQSDE
MSCGHKRRSDKKPVVITCPGNADGTEIISAIMCDGLPECYDLADECNITCKRPTLPPYCQ
LSRRLRRNFERYNLWQYECTSVSGNRRNHTVTELCNGIWSDCDPRLELEETNCSVRFYCQ
SHELISLDRALVCDGYDQCDDGSDEASCDDRYACDKGRPLSVPNRFVSDGIEDCKDGSDE
CPRSLDDKAVASRLEMISQPFFRVWVWVMAFTSLLGNGYVIVKTLR
Nucleotide sequence
Length: 1,398
>Haaura.CG.MTP2014.S319.g04259.01.t
ATGGAATTGGGCAAAAGTAGTCTTCTTTTTCTGCTATTTTACTTCAATTTTGGTCAGGTG
GGAGGACTAAGCTCGTGTGTGGACGGACAATTCACATGTTCGAATTATCGATGCTTGAAC
GGGACTCAAGTGTGCGACCACATAGATTCATGTGGAGACGGCAGCGATGAAATCTTCTGC
AAAAACAAAACAGACAATTGCTGGTCGTGGCAAACGAATTGCACAGGTGGAAAGTGCGAA
GACGATACCTTCCAGTGCAATAACGGAAAATGTATTCCTTTAAATGTCGCTTGCAACCGG
ATGGACAATTGTGGGGACGGAAGTGATGAGATACGTAATAGGAAAGGATTCAAGTGTCCA
TTCGGCGGTGGAGGTGATGTTTGCGTCCTTCCACAAAGACATGTGAACGATAATTTTTTG
CACTGTAGCACCAATCGGGATTTGTGCTCTGAGGGACAAAGCAAGTGCTTTACTTGCTTT
GATCGAATGTTCAAGATATCTTTAACTCAGCAATGTGATGGTATCTTCGACTGTTCGGAT
CTGTCGGATGAATGTCCTTGCGAGAACAATACTCACGATGTATGCTTGAACATTTGCGGA
TTACAAGGGACTAAGGCCAACTGTACTAAAGGAACATATAGTTGTGATAATCAGCTGACT
GAACTAAGGAAGATGACAATTTGTGATGGAATCGCGGACTGCGCAGATCAATCAGACGAA
ATGTCGTGTGGACACAAGAGACGATCTGACAAAAAGCCTGTCGTCATCACTTGCCCGGGA
AATGCTGATGGAACCGAAATTATAAGCGCAATAATGTGTGATGGACTCCCGGAATGCTAC
GACCTTGCGGACGAATGCAATATCACATGTAAGCGCCCCACCTTACCCCCCTATTGTCAA
CTTTCTAGGAGACTTCGTAGAAATTTTGAACGGTATAACTTGTGGCAGTACGAATGTACG
AGTGTATCTGGAAATCGTAGAAATCACACAGTTACCGAACTTTGTAACGGAATATGGTCC
GATTGTGATCCTCGTCTTGAACTGGAGGAGACCAACTGCTCCGTGAGATTTTACTGTCAA
AGTCATGAGCTGATAAGCCTCGACAGGGCGCTGGTATGTGACGGTTACGACCAATGTGAC
GACGGATCCGACGAAGCTTCTTGCGACGATCGTTACGCCTGTGATAAAGGCAGACCGCTT
TCGGTCCCGAACCGCTTCGTATCTGATGGCATAGAAGATTGCAAAGATGGTAGCGACGAA
TGTCCTCGGTCTTTAGATGACAAAGCTGTTGCATCAAGACTGGAAATGATCAGCCAACCA
TTTTTTCGAGTTTGGGTATGGGTGATGGCCTTTACTTCTCTACTGGGTAATGGCTATGTG
ATCGTTAAAACTCTCAGA
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[25-61] 11.663 - T[78-120] 12.038 - T[141-188] 8.762 - T[207-244] 9.613 - T[352-389] 10.088 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[25-60] 1.01E-8 - T[72-112] 7.85E-10 - T[207-245] 6.41E-7 - T[356-388] 2.62E-5 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[25-62] 1.8E-7 - T[78-115] 7.5E-8 - T[148-189] 0.021 - T[207-245] 2.6E-4 - T[257-288] 0.5 - T[352-386] 0.057 - T[387-423] 0.028 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[26-60] 1.69174E-6 - T[79-110] 5.11257E-7 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[36-57] 5.9E-26 - T[89-110] 5.9E-26 - T[163-184] 5.9E-26 - T[219-240] 5.9E-26 - T[264-285] 5.9E-26 - T[399-420] 5.9E-26 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[78-110] 6.4E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP1B_HUMAN | 28.507 % | 88.6 | 1.88E-18 |
| LRP2_HUMAN | 27.209 % | 83.2 | 1.03E-16 |
| SORL_HUMAN | 28.345 % | 85.9 | 1.19E-17 |