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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C2.36.v3.A...' > 
  2. Clone 'cilv035m13' > 
  3. Transcript 'Haaura.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S318.g04257.01.t

Possible name(s)

CD2; RBM12B; SQSTM1

Gene model

Haaura.CG.MTP2014.S318.g04257

Location

S318 [53,784 / 56,224]

Sequences

Amino acid sequence

Length: 276

>Haaura.CG.MTP2014.S318.g04257.01.p
MSLQFKAYLVKGQKNDVKEIRRFAIDTDVSSSYDYLRNKTHRDKPEKKEEDGASANSWTN
QFDNFCNDWQRFAFGHPHPTHPPHGHHPPPPPHGHHAPPLFHGGHHPPPPPHFGQHPPPP
HATAYLSSVGQMVANYLQPLGIDVDIDVEHKGKRTKCAEREEKDDHEDAKAATTEGDDQQ
SRKSPGSENEWTVVNEGNNQNNTDEDMQAEATAPPKETEIKPPSNIDLRLAEALKQMFTM
GFSDEGGWLSRLLEAHNYDIPRALDAIQPAAGHRA*

Nucleotide sequence

Length: 828

>Haaura.CG.MTP2014.S318.g04257.01.t
ATGTCTCTGCAATTCAAAGCTTATCTGGTGAAAGGACAAAAGAATGATGTGAAGGAAATC
CGGCGATTCGCTATCGATACCGACGTCTCATCCAGCTATGATTATTTGCGGAATAAGACA
CACCGTGATAAACCAGAGAAGAAAGAGGAAGATGGTGCATCTGCGAACTCATGGACTAAT
CAGTTTGATAACTTTTGTAATGATTGGCAACGCTTTGCTTTTGGTCATCCCCATCCCACG
CATCCTCCACATGGACATCATCCGCCGCCACCTCCTCATGGACATCATGCACCTCCTCTT
TTCCACGGTGGACACCATCCTCCTCCACCTCCTCATTTTGGACAACACCCACCCCCGCCT
CATGCCACCGCATACTTAAGCTCTGTTGGTCAAATGGTTGCTAATTATTTACAACCACTT
GGCATTGATGTAGATATCGATGTGGAGCATAAGGGGAAGCGAACTAAATGTGCCGAAAGG
GAGGAGAAGGACGATCATGAGGATGCAAAAGCTGCTACGACTGAAGGTGATGACCAACAA
TCCAGAAAATCACCTGGATCTGAAAACGAATGGACTGTTGTAAATGAAGGTAATAATCAG
AATAACACAGATGAAGATATGCAAGCAGAAGCAACAGCTCCGCCTAAGGAAACAGAGATA
AAACCTCCAAGTAATATTGATCTTCGTTTGGCAGAGGCACTCAAACAAATGTTTACGATG
GGGTTCAGTGATGAAGGTGGATGGTTATCGCGTTTGTTGGAGGCACATAATTACGACATT
CCCAGAGCGCTAGATGCCATCCAGCCTGCCGCTGGTCACAGAGCATAA

InterProScan

Pfam
SQSTM_UBA (IPR033741) - T[223-268] 6.0E-18
SUPERFAMILY
UBA-like_sf (IPR009060) - T[225-269] 6.24E-15
CDD
SQSTM_UBA (IPR033741) - T[229-268] 4.08019E-18

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SQSTM_HUMAN 32.099 % 92.4 2.49E-21