Aniseed - Transcript Card

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S302.g04148.01.t

Possible name(s)

TSEN2; TSEN34

Gene model

Haaura.CG.MTP2014.S302.g04148

Location

S302 [58,041 / 59,661]

Sequences

Amino acid sequence

Length: 270

>Haaura.CG.MTP2014.S302.g04148.01.p
MNPRFLRKKKLVGEKGSIPLPVPISTITNLPCKETTWNYFTGDFVDGRVIVECEGDQKSL
YSMGCFGKISPSNLENENLEVGDHALSVLPSPRDSLSRVNPNCLCLSLEEAFFLSYGLGC
LFIRSGSKELSIQEQWTTFCSLMRSFPYRYAAYHHFRIKGWVPREGVKYGTDFVLYKQGP
SYYHASYAVAVMHLNEDTKYSWHTLAGLGRLVSSASKELLLCYVRSPKTKMAFDTPECIK
LMKIHEIVMNRWVSTKEKECEERDIDSTS*

Nucleotide sequence

Length: 810

>Haaura.CG.MTP2014.S302.g04148.01.t
ATGAACCCTCGTTTCCTAAGAAAGAAGAAGTTAGTTGGAGAAAAAGGTTCGATTCCTCTC
CCAGTACCTATATCAACGATAACCAATTTGCCATGCAAGGAGACGACTTGGAATTATTTC
ACTGGAGACTTTGTTGATGGAAGAGTTATTGTAGAATGTGAAGGAGACCAAAAGTCTTTG
TATTCTATGGGATGCTTTGGTAAAATTTCTCCTTCAAATCTGGAAAATGAAAACCTTGAA
GTTGGAGATCATGCTTTATCTGTGCTACCAAGTCCCAGGGATTCATTGTCTCGTGTTAAT
CCGAATTGTTTATGTCTATCTCTGGAAGAAGCCTTTTTTTTATCGTATGGCCTCGGATGT
TTATTTATTAGGAGTGGATCGAAGGAGCTCAGTATTCAAGAGCAATGGACAACTTTTTGT
TCCTTGATGCGATCGTTTCCTTACAGATATGCAGCGTACCATCATTTTAGAATAAAGGGA
TGGGTACCACGGGAAGGCGTGAAATACGGTACAGACTTTGTCCTTTACAAACAAGGACCA
TCATACTATCACGCCAGTTATGCTGTAGCTGTAATGCATCTAAATGAAGATACAAAATAT
TCTTGGCATACACTGGCTGGCCTAGGTCGCTTAGTTTCCTCAGCATCAAAAGAACTCCTA
CTTTGCTATGTACGCTCACCAAAAACAAAAATGGCATTTGACACACCTGAATGTATTAAA
CTTATGAAAATTCACGAAATCGTAATGAATAGATGGGTATCCACAAAAGAAAAAGAATGC
GAGGAAAGAGACATTGACTCAACGTCGTGA

InterProScan

PANTHER	tRNA_splic (IPR006676) - T[19-79] 1.2E-66 - T[100-262] 1.2E-66
Pfam	tRNA_intron_Endonuc_N (IPR006678) - T[42-135] 3.0E-10
PIRSF	tRNA_splic_SEN2 (IPR016589) - T[62-259] 7.1E-60
TIGRFAM	tRNA_splic (IPR006676) - T[113-226] 5.2E-20
Gene3D	tRNA_endonuc-like_dom_sf (IPR011856) - T[143-235] 6.8E-28
SUPERFAMILY	tRNA_intron_Endo_cat-like_sf (IPR036167) - T[145-231] 1.92E-27
Pfam	tRNA_intron_Endonuc_cat-like (IPR006677) - T[147-228] 2.2E-22

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SEN2_HUMAN	45.399 %	154	9.38E-44