- Molecular Tool 'FoxC>emx:WRPW' >
- Transcript 'Haaura.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S278.g03939.02.t
Possible name(s)
RARA; RARB; RARG
Gene model
Location
S278 [6,870 / 14,319]
Amino acid sequence
Length: 401
>Haaura.CG.MTP2014.S278.g03939.02.p
FLTNVFSFSSASPDSVGLSSASSSTSGSESEAIASSYATPPSPPPPPRVYKPCFVCGDKS
SGYHYGVASCEGCKGFFRRSVQKNMQYTCHRNKNCVINKSTRSRCQYCRLQQCFQAGMLR
ESVRNDRNKKRGKEKDGKSGEGSPGSSTSPGQTPDDIVVTSEIETVVSTVSQAHIDTFPL
TQTLSKYNAENEKAKQPPVEPQKAPLDLWLWSKFSELSTKSIIKIVEFAKXXXXXXXLTI
ADQITLLKCACLEILFFRICSRYDPTNDTMSFSDGLTLNRTQLCNCAFGPMTEQVFSFAS
SLHPFDLDHTEGGLLCAICLICADRPDLEEPEKVELLQEPLVEGLKWYSRKRRANKPQVF
PKLILKIADLRCISFRGKLLLVPIVSLQSEKKYHPQRCRH*
Nucleotide sequence
Length: 1,203
>Haaura.CG.MTP2014.S278.g03939.02.t
TTTCTAACCAACGTTTTTTCTTTTTCTTCAGCATCTCCTGATAGCGTGGGTCTTTCATCT
GCGAGTAGCAGCACTTCCGGTTCCGAGTCGGAAGCGATAGCATCCTCTTACGCCACGCCT
CCTTCCCCTCCACCGCCCCCTCGCGTCTATAAGCCATGCTTTGTTTGCGGAGACAAGTCC
TCAGGTTATCACTATGGAGTGGCGTCATGTGAAGGATGCAAGGGATTCTTTCGACGTTCT
GTGCAGAAGAATATGCAATACACTTGTCATAGGAACAAGAATTGCGTCATTAACAAGTCG
ACGCGTAGTCGTTGTCAATATTGTCGTCTGCAGCAGTGTTTTCAAGCTGGCATGTTGAGA
GAATCTGTAAGAAATGACAGAAATAAAAAGCGTGGTAAGGAAAAGGATGGCAAATCGGGA
GAAGGTTCACCTGGATCATCAACATCACCTGGACAGACACCGGACGATATCGTTGTGACC
TCTGAAATCGAAACGGTCGTTAGCACTGTTTCTCAAGCACATATCGATACCTTTCCTCTG
ACGCAAACATTAAGCAAATATAATGCTGAGAATGAAAAAGCGAAGCAGCCACCCGTCGAA
CCGCAAAAAGCGCCGTTGGATCTCTGGTTGTGGAGTAAATTCTCTGAACTTTCAACCAAA
TCCATCATCAAAATCGTTGAGTTCGCCAAACGNNNNNNNNNNNNNNNNNNNCTTACCATT
GCTGATCAAATAACGCTGTTGAAATGCGCCTGTCTCGAAATATTGTTCTTTCGCATTTGT
TCCCGATACGATCCTACAAACGACACCATGTCGTTTTCAGACGGCCTCACTTTGAATCGA
ACACAGCTGTGTAATTGTGCATTCGGACCGATGACAGAACAGGTATTTTCTTTCGCAAGT
TCTCTGCATCCTTTCGATTTAGATCATACGGAAGGAGGACTTCTGTGTGCTATTTGTTTA
ATATGCGCCGATCGTCCTGACCTCGAAGAACCAGAGAAAGTCGAACTATTGCAGGAACCT
CTTGTCGAAGGACTGAAATGGTATTCAAGAAAAAGGAGAGCTAACAAACCTCAAGTTTTT
CCCAAGTTAATCTTGAAAATTGCTGATTTAAGATGTATAAGTTTCAGAGGTAAGCTTTTG
CTAGTGCCGATCGTGTCATTACAATCAGAAAAGAAATACCATCCACAGCGATGCCGCCAC
TAA
| PRINTS |
Retinoic_acid_rcpt (IPR003078) - T[27-44] 4.7E-22 - T[260-284] 4.7E-22 - T[297-309] 4.7E-22 - T[327-348] 4.7E-22 |
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[47-143] 5.2E-34 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[50-125] 20.657 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[50-121] 1.3E-39 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[52-119] 1.3E-31 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[53-79] . |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[53-69] 5.3E-19 - T[69-84] 5.3E-19 - T[102-110] 5.3E-19 - T[110-118] 5.3E-19 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[102-173] 1.53E-54 - T[205-375] 1.53E-54 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[114-124] 6.3E-20 - T[217-238] 6.3E-20 - T[238-254] 6.3E-20 - T[305-320] 6.3E-20 - T[362-379] 6.3E-20 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[212-374] 3.0E-13 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[216-374] 2.9E-26 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RARB_HUMAN | 60.303 % | 404 | 7.23E-139 |
| RARG_HUMAN | 59.697 % | 383 | 1.08E-130 |
| RARA_HUMAN | 58.182 % | 396 | 7.02E-136 |