- Transcript 'Harore.CG.MTP2014.S6...' >
- Transcript 'KH2012:KH.L18.61.v3....' >
- Transcript 'Haaura.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S2617.g09762.01.t
Possible name(s)
PABPC1; PABPC4; SF3B4
Gene model
Location
S2617 [6,683 / 8,500]
Amino acid sequence
Length: 376
>Haaura.CG.MTP2014.S2617.g09762.01.p
MPSCNSVLCSPNKMAAGPISERNQDATVYVGGLDEKVCEPLLWELFLQAGPVVSTHMPKD
RITGHHQGYGFVEFLGEEDADYSIKILNMIKLYGKPIRVNKASSHQKNLDVGANLFIGNL
DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFEASDAAMEAMNGQYL
CNRPITISYAFKKDSKGERHGSAAERLLAVQNPLSQADRPHTLFADAPVMSQPGMGMMGG
GMPPNMPPPPPHMMPGMPPMPPHMGMGPMPPPLGGMPHMPPGSNMQSGMDMQGPPQMPMP
PWGGPPMGPPPQMGVPPQPGMSMNQRGPPMGPPMGGHWGAPAMPPGPPMGSGPIPPAPPM
RGPPPPPQSPSQWDE*
Nucleotide sequence
Length: 1,230
>Haaura.CG.MTP2014.S2617.g09762.01.t
GAGCGATATGGCAAGCTAGTTGGTATGACAAGATACATATTAGTGGCCGCACTTTGGATC
AATATCAACGCATCCATAAGATCCTTTCTAAGGTTGTAGGCCATGCCTTCCTGTAACTCT
GTGCTCTGTAGTCCGAATAAAATGGCTGCAGGACCCATTTCTGAGCGAAATCAAGATGCT
ACCGTTTATGTTGGCGGATTGGATGAAAAAGTCTGTGAGCCCCTATTGTGGGAGTTATTT
CTGCAAGCCGGCCCAGTAGTGAGCACTCACATGCCTAAAGATCGCATAACAGGCCATCAT
CAGGGTTATGGGTTCGTAGAATTTCTTGGGGAGGAAGATGCAGATTATTCAATCAAAATA
TTAAATATGATAAAACTATACGGGAAACCTATCAGAGTGAACAAAGCATCTTCCCATCAA
AAGAATTTAGATGTTGGAGCAAATCTGTTCATCGGAAATCTCGATCCAGAAATTGATGAA
AAATTATTATATGACACATTCAGCGCCTTTGGTGTTATCTTACAAACGCCCAAGATAATG
AGAGATCCTGATACTGGCAATTCGAAAGGATACGCCTTCATCAATTTCGCAAGTTTTGAA
GCGTCCGACGCTGCGATGGAAGCTATGAATGGACAATATTTGTGTAACAGACCGATAACA
ATTTCATATGCCTTCAAGAAAGATTCGAAAGGTGAAAGGCATGGTAGTGCTGCAGAACGA
CTGCTTGCTGTTCAAAATCCATTATCTCAAGCAGATAGACCGCATACATTGTTCGCCGAT
GCACCAGTCATGTCTCAGCCTGGTATGGGTATGATGGGTGGAGGTATGCCTCCCAACATG
CCGCCTCCACCTCCGCATATGATGCCTGGCATGCCACCTATGCCTCCACATATGGGTATG
GGACCAATGCCCCCTCCTTTAGGGGGAATGCCTCATATGCCCCCAGGATCTAACATGCAA
TCAGGTATGGACATGCAAGGCCCACCCCAAATGCCAATGCCACCCTGGGGCGGACCTCCA
ATGGGGCCACCACCACAAATGGGAGTTCCACCTCAACCAGGTATGTCCATGAATCAAAGA
GGGCCGCCTATGGGACCTCCTATGGGTGGACATTGGGGCGCGCCAGCCATGCCACCAGGT
CCACCTATGGGTAGTGGACCAATTCCTCCTGCTCCACCCATGAGAGGTCCACCACCACCT
CCCCAGTCTCCATCTCAATGGGACGAGTGA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[18-107] 2.6E-24 - T[108-201] 3.9E-25 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[25-195] 2.16E-47 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[26-104] 16.722 - T[113-192] 17.182 |
| SMART |
RRM_dom (IPR000504) - T[27-100] 2.2E-18 - T[114-188] 1.3E-24 |
| Pfam |
RRM_dom (IPR000504) - T[28-98] 5.7E-13 - T[115-185] 9.7E-20 |
| CDD |
SF3B4_RRM1 (IPR034158) - T[28-101] 2.98998E-52 |
| CDD |
SF3B4_RRM2 (IPR034159) - T[112-194] 4.31525E-63 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SF3B4_HUMAN | 92.891 % | 417 | 6.28E-145 |
| PABP1_HUMAN | 38.251 % | 125 | 1.41E-31 |
| PABP4_HUMAN | 40.437 % | 130 | 4.62E-33 |