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TRANSCRIPT CARD

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  1. Transcript 'Boleac.CG.SB_v3.S52....' > 
  2. Clone 'cies009m08' > 
  3. Transcript 'Phfumi.CG.MTP2014.S9...' > 
  4. Transcript 'KH2012:KH.C2.469.v1....' > 
  5. Transcript 'Haaura.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S225.g03469.01.t

Possible name(s)

PABPC1L; PABPC3; PABPC4

Gene model

Haaura.CG.MTP2014.S225.g03469

Location

S225 [64,399 / 65,401]

Sequences

Amino acid sequence

Length: 334

>Haaura.CG.MTP2014.S225.g03469.01.p
MASQDTNEKSENTISPTANGMPGSDKKGKKFPGFNLYVKNLDDTFTDESLREAFIKFGSI
TSAKVMRDRELSRGFGFVCFTTLEEATKALTEMNGRIVGSKPLYVAMAQRKEERKQYLTE
KYKNYTPLTTIASPTPPPPPPPPTVTPQPTLPSPLQYYTNTVIPSPPVQYNHVPPEFQPW
STYVVPQAPGIRPGITMMPYQPVMFIPRPQSQMPILHQPIYIQSAKNNTLIYSTNIKHNS
TAATSPGPTYHVSNSTVQAGAKAPTPVVAGLHTVPAVAQLQGKTHNGTVYHQSVLENQVS
SSTVPFQNNETIRSNVDALTSAHMKPPFTYSTT*

Nucleotide sequence

Length: 1,002

>Haaura.CG.MTP2014.S225.g03469.01.t
ATGGCATCTCAGGATACTAATGAAAAATCCGAAAACACGATCAGCCCGACTGCGAATGGA
ATGCCGGGGTCCGACAAAAAGGGCAAAAAATTTCCTGGATTTAATCTCTATGTGAAGAAC
CTCGATGACACCTTTACAGACGAATCATTGAGAGAGGCGTTCATCAAATTCGGCTCCATA
ACGAGCGCCAAGGTCATGCGGGATCGTGAACTCTCTCGTGGTTTCGGTTTTGTCTGCTTC
ACGACTCTTGAAGAGGCGACCAAGGCTCTTACGGAAATGAACGGACGTATAGTGGGCTCA
AAGCCGTTGTATGTGGCTATGGCGCAGCGTAAGGAGGAAAGGAAACAATATCTTACAGAA
AAATATAAGAACTATACGCCCTTGACAACTATTGCTTCTCCAACACCGCCACCACCACCG
CCGCCACCCACCGTGACCCCGCAGCCTACCCTTCCATCTCCTTTGCAGTACTACACTAAT
ACTGTAATTCCTAGTCCACCGGTGCAGTACAACCATGTCCCTCCAGAATTTCAGCCATGG
TCTACCTATGTCGTGCCGCAAGCTCCTGGCATCAGACCGGGAATAACCATGATGCCGTAC
CAGCCGGTCATGTTTATTCCGAGGCCTCAGTCGCAAATGCCAATACTTCATCAGCCGATT
TACATCCAGTCAGCAAAAAATAATACTTTGATTTATTCTACCAACATCAAGCACAATTCC
ACTGCAGCCACGTCACCAGGGCCGACATACCATGTTTCGAATTCTACTGTGCAAGCCGGC
GCGAAAGCGCCAACGCCCGTGGTTGCCGGTCTACATACCGTACCTGCCGTGGCGCAATTG
CAAGGCAAGACGCACAATGGAACTGTTTATCATCAGAGTGTACTTGAAAATCAAGTTAGT
AGCAGCACTGTGCCATTCCAGAATAATGAGACTATTAGAAGTAACGTAGATGCCCTGACA
TCGGCTCACATGAAGCCACCTTTTACCTATTCTACTACATGA

InterProScan

Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-123] 7.0E-28
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[26-117] 4.03E-27
ProSiteProfiles
RRM_dom (IPR000504) - T[34-110] 18.649
SMART
RRM_dom (IPR000504) - T[35-106] 2.7E-25
Pfam
RRM_dom (IPR000504) - T[36-103] 1.8E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PABP4_HUMAN 70.968 % 142 5.14E-38
PABP3_HUMAN 48 % 137 2.94E-36
PAP1L_HUMAN 52.593 % 137 5.16E-36