- Transcript 'Haaura.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S224.g03455.02.t
Possible name(s)
TGFBRAP1; VPS39
Gene model
Location
S224 [46,239 / 48,993]
Amino acid sequence
Length: 918
>Haaura.CG.MTP2014.S224.g03455.02.p
MSKVFELKFLVGRESIMGNKPRIMIESMATSGKNLFVGTTDGTICHFVLNEIPKNENPGR
PSPSDGSDLKIALQNKTRVSTKKPVVQIETAPELKCLLINSDGCIYAYSMMDLSPSFEIF
GKLKNVSRFYVNSYPIHANPFAVEICVSYSKKRSVQLYQVQEDSIVPLKEVTLPEHPRSL
ALDGRHMCVGTLSGYLMVDMDSNTRQDLFPVVDTKLLVHRVAPSEFLLAAPNNLGVFVTS
AGISQRPPIQWSEGTFQASYIYPYVVAMNDEFVTIHSVLDQQQKQTLPFQGGIVLFESIP
DKLLVCTGKDIFILVLIPYETQITTLLNQSKVDEAMELAKAFRKCMSREKYQGMMSRIYK
RAGFVHFRNLFFDAAEAMFTLGRIDAREIIVLYPGLLPDSSTVRNSSDLHSITNIHDMCH
HDSEKIQECEEFLASYLQLHPLTIKSDHSDSSTNPFAKEKLENNPEYRYDFFHASLKIFS
KLHSTKEILFSFQGEHEPISKTIPARSPLFFEFLKKFDVVSAILDEHGCFHARAMFTLLG
DRVDDAMQQWKALAVGIKKDLDFPGLFFIAEQLGKYYNDVSLLWKHVAWILELDQHVGVS
IFTKHLPLSEQSSKSESKEESNLPKTDDIIAFLHHYPQSVTIYLEYLVYTCRVQKEKFHT
HLAVLYLDSVLNILADNDKNEEEFAQAREKLQTLLKKSSLYRVSLILSKVKDTDLHEECV
ILLGKLGEHEKSLDILVNKMRDQTAAEEYCLTQSTDMDSRKQLFRSLLSVYLSKVSISSS
KSSRSAMAVVDLLNKYAENYNAQEVLNLLPKTWSVTLLTRFLSRTLRIQKHGVCTDQLQH
KLERCENNNVKKEHIQVLNKCVSINEDKICQVCNRLFQDSDCTLYPNGVAVHKHCGTNKF
VCPVTGKLFKTLPFPKH*
Nucleotide sequence
Length: 2,754
>Haaura.CG.MTP2014.S224.g03455.02.t
ATGTCAAAGGTATTTGAGCTGAAGTTTCTAGTGGGGAGAGAAAGCATCATGGGGAACAAA
CCACGGATCATGATAGAGTCCATGGCGACAAGCGGCAAAAACTTGTTTGTAGGTACGACT
GATGGAACAATTTGCCATTTTGTTCTGAATGAAATTCCTAAAAATGAAAATCCTGGTCGT
CCGAGTCCAAGTGATGGTAGTGACCTAAAAATAGCTCTTCAGAACAAGACTCGTGTTTCA
ACAAAGAAGCCTGTCGTTCAGATAGAAACAGCCCCTGAGCTCAAATGTCTATTGATTAAT
TCTGATGGCTGCATTTATGCGTACAGCATGATGGATTTGTCTCCGTCTTTTGAAATATTT
GGGAAACTTAAGAATGTTAGCAGGTTTTACGTCAACAGCTATCCAATTCATGCAAATCCT
TTCGCAGTTGAAATATGCGTATCGTATTCTAAAAAGAGAAGTGTCCAACTGTACCAAGTC
CAAGAGGACAGTATCGTGCCACTCAAAGAAGTAACATTGCCAGAACACCCTAGATCCCTC
GCATTAGATGGCCGTCACATGTGTGTAGGTACTTTGTCCGGGTATTTAATGGTCGACATG
GATTCGAACACTCGGCAAGATCTTTTTCCCGTTGTAGACACTAAACTGTTGGTGCATAGA
GTTGCTCCGTCAGAATTCCTTCTTGCTGCCCCGAATAATTTGGGAGTTTTTGTGACCTCA
GCTGGTATCTCCCAGCGACCCCCCATTCAGTGGTCGGAGGGTACATTTCAAGCTTCTTAC
ATCTACCCATATGTTGTTGCCATGAATGATGAGTTTGTCACTATACACAGTGTGCTTGAT
CAACAGCAGAAACAGACTTTACCTTTTCAGGGCGGTATTGTTCTTTTTGAAAGCATTCCT
GATAAGTTACTTGTCTGTACAGGCAAAGATATATTCATTTTGGTTCTGATACCTTACGAA
ACCCAAATCACAACCCTTTTGAATCAATCGAAAGTAGATGAGGCGATGGAACTGGCAAAG
GCATTTAGAAAATGTATGTCGAGGGAGAAGTATCAAGGTATGATGTCAAGAATTTACAAA
AGAGCGGGCTTCGTGCATTTCAGAAACCTCTTTTTTGATGCTGCGGAGGCAATGTTTACT
TTGGGTCGTATCGATGCCAGAGAAATCATTGTGCTTTATCCTGGATTACTGCCTGATAGT
TCTACCGTGAGAAATTCATCAGATCTTCACAGTATAACCAACATTCACGATATGTGCCAT
CACGACAGTGAGAAAATACAAGAATGTGAAGAGTTCCTAGCTTCCTATCTTCAACTGCAC
CCTCTGACAATTAAATCAGATCATTCTGATAGCTCAACTAATCCTTTTGCAAAGGAAAAG
CTTGAAAACAATCCCGAGTATAGATATGATTTCTTTCATGCCAGTCTCAAAATCTTTTCC
AAGCTGCATTCTACAAAGGAGATTCTTTTTTCATTTCAAGGAGAACACGAACCTATTTCC
AAAACAATACCCGCAAGAAGTCCACTTTTCTTCGAATTTTTAAAGAAATTTGATGTTGTC
TCTGCAATCTTGGATGAACACGGATGCTTTCACGCTCGAGCGATGTTTACTTTGCTAGGC
GACCGTGTCGATGATGCGATGCAACAGTGGAAAGCACTGGCTGTTGGAATAAAGAAAGAT
TTGGACTTTCCAGGACTTTTTTTCATTGCAGAGCAGCTTGGAAAATACTATAATGATGTT
TCATTGCTTTGGAAACACGTTGCTTGGATCTTGGAACTTGATCAACATGTTGGGGTATCG
ATTTTCACCAAGCACTTGCCTTTGTCAGAGCAATCTAGCAAGTCTGAGTCAAAGGAAGAG
AGCAATCTTCCGAAAACTGATGACATTATAGCTTTTCTTCATCACTATCCGCAATCAGTG
ACTATCTACCTCGAATACTTAGTTTATACTTGCAGGGTACAAAAAGAAAAGTTCCACACT
CACTTGGCAGTTCTTTATCTTGACTCAGTTCTGAATATTCTTGCCGATAATGATAAAAAT
GAAGAAGAATTTGCTCAAGCCAGGGAGAAGCTGCAGACCCTTTTAAAGAAGTCAAGTCTC
TATAGAGTATCTCTTATACTCAGCAAAGTGAAAGACACTGATCTCCACGAAGAATGCGTC
ATTCTGCTTGGAAAACTGGGAGAACATGAAAAATCCCTGGACATACTTGTCAATAAAATG
AGGGATCAAACGGCTGCAGAGGAATACTGTTTGACCCAAAGCACTGACATGGATAGCAGA
AAGCAACTGTTCAGAAGCCTTCTATCAGTTTATCTGAGCAAGGTCAGCATAAGCTCTTCT
AAGTCATCGAGGTCTGCGATGGCAGTCGTCGATTTATTGAACAAATATGCAGAAAACTAC
AACGCACAGGAAGTCCTGAACCTACTTCCGAAAACATGGTCTGTCACTCTTCTTACCAGA
TTTCTTAGTCGTACTCTTAGAATACAGAAGCATGGTGTCTGTACCGACCAGCTCCAACAC
AAGCTCGAAAGGTGCGAGAATAATAACGTAAAAAAAGAACATATTCAAGTTTTGAATAAA
TGTGTTTCTATAAATGAGGATAAAATTTGTCAGGTGTGCAACAGACTGTTCCAAGATTCT
GATTGTACACTATACCCAAATGGCGTTGCAGTACACAAACATTGCGGCACTAATAAATTT
GTTTGTCCTGTTACGGGTAAATTGTTCAAGACCTTGCCATTTCCCAAGCATTAG
| PANTHER |
Vam6/VPS39/TRAP1 (IPR032914) - T[13-898] 1.8E-161 |
| ProSiteProfiles |
CNH_dom (IPR001180) - T[22-302] 22.133 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[29-197] 3.66E-6 |
| Pfam |
CNH_dom (IPR001180) - T[73-288] 1.0E-18 |
| ProSiteProfiles |
Clathrin_H-chain/VPS_repeat (IPR000547) - T[614-776] 21.59 |
| Pfam |
VPS39/TGF_beta_rcpt-assoc_2 (IPR019453) - T[790-896] 2.3E-23 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VPS39_HUMAN | 24.351 % | 158 | 1.39E-39 |
| TGFA1_HUMAN | 35.872 % | 548 | 0 |
