- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Haaura.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S2003.g09155.01.t
Possible name(s)
COL12A1; FN1; TNN
Gene model
Location
S2003 [815 / 10,796]
Amino acid sequence
Length: 1,151
>Haaura.CG.MTP2014.S2003.g09155.01.p
MELIIVLLLCASVLHSEAQINNIPSPKNLKVVEDSVTDTGFWITWEPVSKADSYRVVLSP
PTIGAGGVGNGITDKFTAVEGLAPDTGYTVRIIPVKGNDEGTAAVVFQRTALPAPSSLFV
VSDSVSANEMVVGWSEVKDAESYTVEVAPSTGVSGPGRGIYKNSVTLRGLTADTLYTITV
KPINWVGLGGAATIKQLTKLPPPANVRVVTETVSHNSMSVHWDPVVGANTYQVSVSPPDG
VLGAGQGITDSYVILRNLQADTQYRIQIAASSAAGLSDYRQAIAKTLSVCYAKGIDFTVD
SFKITCPARCARNQEHVYGTREYTDDSYVCAAAVHDGRIDDNVGGEVVIKKRPGLPHYVG
TGKHGVISQDYGSWHRSFVFGLQIPQNVRVQPGSVTHSTITLEWTAVSGADSYRVSVQPD
LNVVGARPGIEDTKVTLSNLKSDTEYRVYLTATNTLETSEAAIIVQHTALPGPKNVHIVP
NSVTHDRMNVSWYPVAASSHYVVVVRAGETEFTHETHDVSAMIDGLQSGIGYLIGVRAVN
SVGLGEITGITQYTKLSTPENVVAESVNWHRMHIEWDAVSGAKHYIVSTIPSGIRNASEE
TAQPWIWLEDLSPDTLYDVRVQAVNAHERSRSVVIKQMTALGAPRNLEIDSKNHNSFTVM
WDRMKNADSYYVTIRSIDGKYGTEDELSANKFTVTGLKGKTEYQIKVSGRNKLGDGKPAK
RGVTTLIPPPSDLTIRASTINPSQIKVTWEQIFDATGYYMSVTPSAGLSGAGILRRNEAL
LSGLRSGILYEVTVMAFIGAEKGVNTSTTFATGLPSPQNVRINDEYTTTDMLAVEWDVVN
LAEYYNITIKNLESSMLKTITPVYNSSYVFDELPAGTQFLITIYAVGKTRQDGKIKQLGS
PGATAVGVTKLNMPRSIAVVNTTSTEATVAWDLVPTATQYRVYIAPEEGTSGSGVYEDPQ
AHFSGLVEDQTYVVWVYALNSKNNASSDRLELSMVAGGVSDDGFNYDHGGGWLGGNEIGQ
PEDSGEDFGTTGFDKNDKQSGEGTKESTKDNTSWIVIVVICVCLALLILLLIIPCCCDCA
RSKPLLKFHGCCGCFAACSDVGCCGCRGCCPSNTTRQKMEEDDDDNEVARSRPHTPTNRM
PGRIRSTDTR*
Nucleotide sequence
Length: 3,559
>Haaura.CG.MTP2014.S2003.g09155.01.t
ATGGAGTTAATCATCGTGCTGCTACTCTGTGCGTCAGTACTTCATTCAGAGGCGCAGATT
AACAACATTCCTTCGCCGAAAAACCTGAAGGTAGTGGAAGATTCCGTCACTGACACTGGA
TTTTGGATCACTTGGGAACCTGTGTCCAAAGCAGATTCATACAGAGTAGTTTTGTCACCA
CCTACGATCGGTGCTGGAGGTGTTGGGAACGGAATTACCGATAAGTTTACAGCAGTTGAA
GGTTTAGCACCCGATACTGGATACACAGTGAGGATCATACCCGTAAAGGGAAATGACGAG
GGAACAGCGGCAGTCGTATTTCAAAGAACAGCACTTCCTGCACCAAGCAGTTTGTTTGTG
GTATCTGATTCTGTGAGTGCAAACGAAATGGTTGTAGGATGGTCAGAAGTAAAGGATGCA
GAATCTTACACAGTGGAAGTTGCTCCTTCAACAGGAGTCAGTGGACCCGGTAGAGGAATA
TACAAGAATTCTGTTACTTTGCGTGGACTGACTGCTGACACTCTGTACACAATTACAGTT
AAACCTATTAATTGGGTCGGTTTGGGAGGAGCAGCCACAATAAAGCAACTGACGAAATTA
CCACCTCCGGCCAATGTTCGAGTCGTAACCGAAACAGTGTCTCATAATTCAATGAGCGTT
CACTGGGATCCAGTGGTTGGTGCCAACACCTACCAGGTATCCGTTTCTCCACCAGATGGC
GTACTGGGAGCTGGTCAAGGAATCACTGACAGTTATGTAATCTTAAGAAATCTTCAAGCA
GACACACAGTATCGAATCCAAATTGCCGCCAGCAGTGCTGCTGGACTCAGCGACTACAGA
CAAGCGATTGCTAAGACATTGTCAGTTTGTTACGCCAAAGGAATTGATTTTACCGTCGAT
TCGTTCAAAATTACTTGCCCTGCCAGATGCGCTCGAAATCAGGAACACGTTTATGGAACA
CGAGAATATACTGATGATTCTTATGTCTGCGCTGCGGCTGTTCACGATGGGCGCATTGAC
GACAACGTTGGAGGAGAAGTAGTTATAAAGAAAAGGCCCGGTCTACCCCATTACGTTGGA
ACCGGGAAACATGGCGTCATTTCACAAGATTACGGCAGCTGGCATCGTTCCTTCGTTTTC
GGCTTGCAAATACCACAAAACGTACGTGTCCAGCCGGGATCTGTAACACATTCAACTATA
ACCTTGGAGTGGACCGCTGTCAGTGGTGCTGATAGTTACCGGGTTTCTGTTCAACCTGAT
CTGAACGTCGTTGGTGCAAGGCCAGGTATCGAAGATACTAAAGTGACATTAAGCAACTTG
AAATCAGATACAGAGTACCGTGTTTACCTTACGGCAACAAATACACTAGAAACAAGCGAA
GCGGCTATAATCGTACAGCACACGGCCTTGCCCGGACCCAAAAACGTCCACATAGTCCCA
AATTCTGTCACCCACGATCGTATGAACGTTTCTTGGTATCCAGTCGCCGCTTCGTCGCAT
TACGTTGTAGTTGTCAGAGCTGGAGAGACGGAATTCACTCATGAAACCCATGACGTTTCG
GCAATGATCGACGGACTTCAGAGCGGAATTGGTTATTTGATTGGAGTGCGCGCAGTCAAC
AGTGTTGGTTTGGGAGAAATTACTGGTATAACACAATACACAAAGCTTTCCACACCCGAA
AATGTAGTCGCGGAATCTGTGAATTGGCACAGAATGCATATAGAATGGGATGCTGTGTCA
GGCGCAAAGCATTACATCGTTTCTACTATTCCATCTGGCATTCGAAATGCATCTGAAGAA
ACAGCTCAGCCTTGGATCTGGTTGGAAGACCTATCTCCAGATACTTTATATGATGTTCGA
GTTCAAGCAGTCAATGCACATGAAAGAAGTCGTTCGGTTGTTATCAAGCAGATGACAGCA
CTCGGAGCACCACGAAATTTAGAAATCGATTCGAAAAATCACAACAGCTTCACGGTGATG
TGGGATAGAATGAAGAACGCAGATTCGTACTACGTAACAATTCGTTCGATCGACGGGAAA
TATGGCACTGAAGATGAATTGTCAGCGAATAAATTCACAGTTACCGGTCTGAAAGGAAAA
ACGGAATACCAAATCAAAGTTTCCGGGAGGAATAAACTGGGAGATGGAAAGCCTGCAAAA
CGAGGTGTCACTACGCTGATACCTCCGCCTTCGGACCTTACCATTCGGGCAAGCACTATT
AATCCGTCTCAAATTAAAGTCACTTGGGAACAGATATTCGATGCAACTGGTTACTATATG
TCAGTAACGCCATCTGCAGGATTAAGTGGAGCTGGTATATTGCGAAGAAATGAAGCCTTG
CTGAGTGGTCTTAGATCAGGAATTCTATATGAAGTCACTGTTATGGCTTTCATTGGCGCG
GAGAAAGGAGTGAATACAAGTACAACGTTCGCAACCGGTCTTCCATCACCGCAGAACGTT
AGAATAAATGACGAATACACAACAACAGATATGCTAGCTGTCGAATGGGATGTCGTAAAT
CTCGCTGAATATTACAATATAACCATAAAGAATTTAGAATCCTCAATGCTGAAAACCATA
ACACCAGTCTATAATTCATCGTACGTTTTTGATGAGCTTCCAGCTGGAACCCAGTTCCTA
ATCACGATATACGCTGTTGGAAAAACAAGGCAGGATGGCAAAATAAAACAGCTGGGTTCG
CCAGGGGCAACTGCGGTCGGCGTGACAAAACTCAATATGCCACGCAGCATCGCTGTTGTG
AATACCACATCCACTGAAGCTACTGTGGCATGGGATCTGGTGCCAACGGCCACACAGTAT
AGAGTGTATATCGCCCCGGAAGAAGGCACATCAGGCAGTGGCGTATATGAAGATCCACAG
GCACACTTTTCAGGCTTAGTCGAAGATCAAACTTACGTCGTATGGGTGTATGCATTGAAC
TCCAAGAATAATGCTAGCAGTGATCGCCTAGAACTTTCTATGGTTGCTGGAGGTGTTTCC
GATGACGGGTTCAATTACGACCACGGCGGTGGATGGTTAGGAGGAAACGAAATTGGTCAA
CCAGAAGATAGTGGTGAGGACTTTGGAACAACAGGATTTGACAAGAACGACAAGCAGTCG
GGCGAGGGAACAAAGGAATCGACTAAAGACAACACAAGTTGGATCGTTATAGTCGTCATC
TGCGTTTGTTTAGCTCTACTCATTCTTTTATTAATAATACCCTGCTGCTGCGATTGTGCA
AGGAGCAAGCCCTTGTTAAAATTTCATGGATGCTGTGGATGTTTTGCTGCCTGCAGCGAC
GTAGGCTGCTGCGGTTGCAGAGGATGTTGTCCATCCAACACCACCAGGCAGAAAATGGAA
GAGGATGATGATGATAATGAAGTGGCCAGGAGTAGGCCGCATACACCAACTAACCGCATG
CCTGGAAGAATACGCAGTACAGACACACGGTAGATACACTACGTTTCCTTCATTGCGATT
TATGGAAATTTTCGCTAAAAAGGGAATTGATTTCTTAGTCTTAACAGTAGGCGCGATATT
TCTACCATTTTTATTGTCC
| Gene3D |
Ig-like_fold (IPR013783) - T[17-115] 3.5E-9 - T[116-197] 5.5E-7 - T[198-286] 5.0E-10 - T[383-469] 1.2E-11 - T[470-555] 1.9E-8 - T[556-639] 6.8E-12 - T[640-727] 1.6E-14 - T[728-814] 6.5E-8 - T[911-995] 1.6E-10 |
| SMART |
FN3_dom (IPR003961) - T[23-103] 3.0E-4 - T[113-189] 3.0E-4 - T[200-277] 6.6E-8 - T[382-459] 1.1E-5 - T[470-545] 1.1E-4 - T[556-630] 7.7E-8 - T[641-716] 6.4E-9 - T[726-803] 0.0014 - T[814-893] 1.4 - T[911-986] 3.7E-6 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[24-110] 3.24E-8 - T[120-283] 1.2E-17 - T[385-554] 1.53E-18 - T[557-720] 2.81E-21 - T[733-887] 1.14E-10 - T[908-982] 7.61E-9 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[25-114] 11.33 - T[115-201] 7.062 - T[202-292] 12.71 - T[384-472] 14.241 - T[474-557] 8.537 - T[558-642] 12.095 - T[643-730] 14.257 - T[731-815] 6.146 - T[816-912] 8.127 - T[913-1002] 11.314 |
| CDD |
FN3_dom (IPR003961) - T[26-101] 5.03168E-4 - T[113-198] 9.66347E-5 - T[201-279] 6.91769E-7 - T[385-468] 3.66825E-7 - T[473-546] 2.37259E-4 - T[557-639] 2.50896E-6 - T[642-725] 3.01806E-9 - T[728-812] 0.00853565 - T[914-982] 2.12785E-5 |
| Pfam |
FN3_dom (IPR003961) - T[201-277] 1.7E-5 - T[643-718] 2.6E-9 |
| ProSiteProfiles |
LCCL (IPR004043) - T[284-378] 23.048 |
| Gene3D |
LCCL_sf (IPR036609) - T[287-382] 7.7E-28 |
| SUPERFAMILY |
LCCL_sf (IPR036609) - T[290-380] 4.18E-24 |
| SMART |
LCCL (IPR004043) - T[290-369] 6.8E-12 |
| Pfam |
LCCL (IPR004043) - T[296-378] 1.8E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COCA1_HUMAN | 25.957 % | 97.4 | 3.76E-20 |
| TENN_HUMAN | 24.97 % | 144 | 1.0E-34 |
| FINC_HUMAN | 23.394 % | 110 | 2.58E-24 |