- Transcript 'Boleac.CG.SB_v3.S428...' >
- Clone 'cicl093c04' >
- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S1.g00043.02.t
Possible name(s)
SMC1A; SMC2; SMC3
Gene model
Location
S1 [313,764 / 320,287]
Amino acid sequence
Length: 1,208
>Haaura.CG.MTP2014.S1.g00043.02.p
MHIKRVSIQGFRSYRESTEVEPFSSKHNIIVGRNGSGKSNFFSAIQFVLSDEFSNLRAEQ
RQQLLHEGTGARVISANVEIVFDNSDNRLPIDKEEVTLRRVIGSKKDQYFLDKKMVTKND
VMNLLESAGFSKSNPYYIVKQGKINQMATAPDSDRLRLLREVAGTRVYDERKNESRILME
ESASKLTKTEELLTMIEDRLSTLKSEKEELSQYQQCDKTRRSLEYTIFNLDLTETKNKLE
TLTYKRETNSVQAKHLRSQQEDAQRRTKDKQKRLSQVNTQIDQLSEEKDQSSADRQELIK
KKAQLELACTDFREQLESNERSMMQAQAELGDLNARITKKSDELTDVKPQYEDAEKRERD
SARDLKAAEQRRKELFAKQGRGNQFLSREDRDSWITKELKTLERGVRDKETQIKNLHDEI
RDSEKMQESLQGVIADKNIKIQEHKSIMDAQTREATNLKRHKDELQGQRQRLWRDESKIM
QELDSIASEIKAKEHTLNSIIGKATFHGIESIEKVRKTFLERNQGDLVDGYYGMLIENFR
CHKNFFTCVEVTSGGKLFNHIVSTDRVGTKYLNEMNLQHLHGEVTFLPLNKLEIRDVEYP
ETTDALPMITKLTYEQQYETAIKYVFGKTLICRSMEVSTQLARLHQLDCVTLEGDQVSRR
GALTGGYVDNRKSRLDLYIAKHDLKQALEEKQQEIAVNKEQQQKLEAEATKVMDDLQKLE
TKNKKIKDIFDKLKVDVRMLKEQLQEQQRALEPKQRSLAIFQSNCEELKSTERSLREEVG
TNLLSQLSAEDQTEMDRLSDTIKQLSGHNKEAVGQRVRLEGKKTSLQNLLDDNLLRRKKQ
LVQEMQELSVEVQKQKLEQTENDRKNTEEKLAMTDEKLKELENEIMKFEREQGSLSAKVE
ELRSKERELREKITDDVRELEKVTSKQSVLLKKKEECMKKIRDLGSLPQDAFTKYEGYSS
RQLMKKLDESNLELKKYSHVNKKALDQFVSFSEEKEKLLDRKEEIYRGKQAIIFLMDHME
QQKYEAIQFTFRQVSKNFSEVFVKLVPGGKATLVMKKGESQSQGSESDHATPSDQPASAV
DQFVGVGIKVSFSGKAAETREMRQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALD
PAHRTSVSNMIKELSLSAQFITTTFRPELLEAADKFYGVIHRNKVSLVRTITKEEAREFV
EDDTMHG*
Nucleotide sequence
Length: 3,624
>Haaura.CG.MTP2014.S1.g00043.02.t
ATGCACATCAAACGGGTAAGCATTCAGGGCTTCCGTAGTTACCGAGAATCGACAGAAGTG
GAGCCATTCAGTTCGAAGCACAACATCATTGTTGGCAGAAATGGCTCTGGAAAAAGTAAT
TTTTTCAGTGCAATTCAGTTTGTCCTCAGCGATGAGTTCAGCAACTTGCGAGCAGAGCAA
CGTCAGCAGTTGCTACACGAGGGAACGGGTGCCAGAGTTATATCAGCCAATGTAGAAATT
GTGTTTGACAATTCGGACAACAGATTACCAATTGATAAAGAGGAAGTTACTCTAAGAAGA
GTGATCGGCTCCAAGAAAGATCAGTATTTTCTTGACAAGAAGATGGTTACAAAAAATGAT
GTAATGAATTTGCTTGAGTCAGCTGGATTTTCAAAAAGCAACCCCTATTACATAGTAAAG
CAAGGAAAAATCAATCAAATGGCAACGGCACCAGACTCGGACAGACTTCGCTTGTTGCGC
GAAGTCGCTGGAACTCGGGTTTACGACGAAAGGAAAAACGAAAGTCGGATACTAATGGAA
GAATCTGCGAGTAAACTTACTAAAACAGAGGAGCTTTTGACCATGATAGAGGATCGTCTT
TCTACCCTTAAGTCGGAAAAAGAGGAACTGTCCCAGTACCAGCAGTGTGATAAAACACGC
CGGTCTCTCGAATACACAATCTTTAATCTGGATTTAACTGAAACGAAGAATAAATTGGAA
ACCCTCACATATAAGAGAGAAACCAATTCAGTGCAAGCAAAGCACCTTCGTTCCCAGCAA
GAGGACGCACAGAGAAGAACTAAGGATAAGCAAAAACGATTGTCTCAAGTCAACACTCAG
ATTGATCAGTTATCAGAAGAAAAAGATCAATCATCTGCTGATAGACAAGAACTTATAAAG
AAAAAGGCGCAACTGGAACTGGCATGCACGGATTTTAGAGAACAGCTAGAATCTAATGAG
AGATCCATGATGCAAGCTCAGGCCGAATTGGGTGATTTGAATGCAAGAATTACGAAAAAA
TCAGATGAGCTCACAGATGTGAAACCGCAGTACGAAGATGCTGAAAAAAGGGAGAGAGAT
AGCGCAAGAGATCTCAAAGCTGCAGAACAGCGCCGCAAGGAACTATTTGCAAAACAAGGC
AGAGGAAATCAGTTCCTCTCACGTGAAGATCGTGACTCGTGGATTACAAAAGAACTGAAG
ACACTCGAACGAGGCGTGCGTGACAAGGAAACTCAGATCAAAAATCTACATGATGAGATT
CGGGATAGCGAAAAGATGCAGGAATCATTACAAGGAGTCATTGCCGACAAAAATATTAAG
ATTCAAGAACATAAATCAATAATGGATGCCCAAACCAGAGAAGCTACAAATTTGAAAAGA
CACAAGGATGAGCTGCAGGGTCAAAGACAAAGATTATGGAGAGACGAGTCAAAGATCATG
CAAGAATTGGATTCAATTGCATCTGAGATTAAAGCTAAAGAACATACATTGAATTCCATC
ATCGGCAAAGCTACTTTTCACGGTATCGAGAGTATAGAAAAGGTTCGGAAAACCTTCCTG
GAACGCAATCAAGGGGACCTTGTCGATGGATACTACGGAATGCTGATAGAGAATTTTCGT
TGTCACAAAAATTTCTTCACTTGTGTTGAAGTTACTTCTGGGGGCAAGCTCTTCAATCAT
ATTGTCTCCACAGATAGAGTCGGAACTAAATATCTAAATGAAATGAACTTGCAGCATTTA
CATGGCGAGGTTACTTTTCTTCCTCTGAACAAACTTGAGATAAGAGATGTGGAATACCCA
GAGACCACGGACGCTCTTCCCATGATCACCAAACTAACGTACGAACAGCAATATGAAACC
GCAATCAAGTATGTGTTCGGAAAAACACTCATATGTCGCAGTATGGAGGTTTCGACTCAG
CTTGCTCGACTACATCAACTGGATTGTGTTACTCTTGAAGGAGACCAAGTTTCTCGTCGT
GGTGCCCTGACAGGTGGCTATGTAGACAACAGAAAATCAAGGCTCGACCTGTACATTGCT
AAGCATGATTTGAAACAAGCTTTGGAAGAAAAGCAGCAGGAAATAGCAGTGAATAAAGAA
CAGCAGCAGAAGCTTGAGGCTGAAGCCACTAAAGTAATGGATGACCTTCAGAAACTAGAA
ACAAAAAATAAGAAGATCAAAGATATCTTTGACAAACTAAAAGTAGATGTCAGAATGCTG
AAAGAACAGTTGCAAGAACAGCAGCGTGCTCTGGAGCCAAAGCAACGTTCATTGGCAATC
TTTCAAAGCAATTGCGAAGAGCTGAAGTCAACTGAAAGGTCACTCCGTGAAGAAGTCGGG
ACGAATTTGCTCTCCCAGCTCTCTGCAGAAGACCAAACAGAGATGGATCGACTCAGTGAC
ACTATTAAGCAGTTGTCTGGGCATAATAAGGAAGCTGTAGGGCAAAGAGTGAGGCTAGAA
GGAAAAAAGACAAGCCTCCAGAATCTTCTGGATGACAATTTGCTACGTCGCAAAAAGCAA
CTAGTGCAGGAAATGCAAGAATTGTCTGTCGAGGTACAGAAACAAAAGCTGGAGCAAACT
GAAAACGACCGCAAGAACACTGAGGAAAAACTGGCTATGACAGACGAGAAACTTAAAGAG
CTCGAAAATGAAATCATGAAATTTGAGCGTGAGCAGGGTAGCTTATCTGCAAAGGTCGAA
GAACTTAGAAGTAAGGAACGTGAATTGAGAGAAAAAATTACAGATGACGTGAGGGAGCTT
GAGAAGGTCACCAGCAAACAGAGTGTGCTACTGAAAAAGAAAGAAGAATGCATGAAGAAG
ATCCGTGATCTAGGCTCCCTTCCACAAGATGCTTTCACCAAATATGAAGGATACAGTTCT
AGACAATTGATGAAAAAGTTGGACGAAAGCAACCTGGAATTAAAGAAATACTCCCACGTC
AACAAGAAAGCCCTGGATCAGTTTGTGTCATTTTCAGAAGAGAAAGAGAAACTGCTGGAC
CGAAAAGAAGAGATCTATAGGGGAAAACAAGCTATTATATTTCTAATGGACCACATGGAA
CAGCAAAAGTATGAAGCAATACAATTCACTTTCCGCCAAGTTTCAAAAAATTTCAGCGAA
GTCTTTGTCAAATTGGTACCCGGCGGAAAGGCAACGCTGGTCATGAAAAAGGGAGAGTCG
CAATCCCAAGGGAGTGAGAGCGATCATGCAACTCCTTCTGATCAACCAGCCTCTGCTGTT
GATCAGTTTGTAGGTGTGGGAATTAAGGTGTCCTTTTCTGGTAAAGCCGCCGAGACTCGG
GAGATGAGACAGTTATCCGGCGGACAGAAGTCTCTTGTGGCGCTTGCACTGATCTTCGCA
ATTCAGAAATGTGATCCTGCTCCATTCTACTTGTTTGACGAGATTGACCAAGCATTGGAT
CCTGCACACAGGACCTCAGTCTCCAACATGATCAAAGAACTAAGTCTGTCCGCGCAATTC
ATAACAACCACATTCAGACCAGAACTGCTCGAAGCTGCTGATAAATTCTATGGTGTAATT
CACAGAAATAAGGTATCTTTGGTGCGAACCATCACCAAGGAAGAAGCACGTGAATTTGTA
GAAGATGACACAATGCATGGATGA
| PIRSF |
SMC (IPR024704) - T[1-1199] 1.0E-147 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[1-175] 6.71E-41 - T[1091-1179] 6.71E-41 |
| Pfam |
RecF/RecN/SMC_N (IPR003395) - T[2-1185] 5.1E-61 |
| SUPERFAMILY |
SMC_hinge_sf (IPR036277) - T[481-687] 2.09E-38 |
| Pfam |
SMC_hinge (IPR010935) - T[529-641] 7.8E-18 |
| SMART |
SMC_hinge (IPR010935) - T[529-642] 6.3E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SMC2_HUMAN | 25.039 % | 246 | 9.77E-67 |
| SMC1A_HUMAN | 22.54 % | 100 | 2.23E-21 |
| SMC3_HUMAN | 55.528 % | 1275 | 0 |