- Transcript 'KH2012:KH.C5.66.v2.A...' >
- Transcript 'KH2012:KH.C7.546.v2....' >
- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S1.g00043.01.t
Possible name(s)
SMC1A; SMC2; SMC3
Gene model
Location
S1 [313,764 / 319,760]
Amino acid sequence
Length: 1,094
>Haaura.CG.MTP2014.S1.g00043.01.p
MVTKNDVMNLLESAGFSKSNPYYIVKQGKINQMATAPDSDRLRLLREVAGTRVYDERKNE
SRILMEESASKLTKTEELLTMIEDRLSTLKSEKEELSQYQQCDKTRRSLEYTIFNLDLTE
TKNKLETLTYKRETNSVQAKHLRSQQEDAQRRTKDKQKRLSQVNTQIDQLSEEKDQSSAD
RQELIKKKAQLELACTDFREQLESNERSMMQAQAELGDLNARITKKSDELTDVKPQYEDA
EKRERDSARDLKAAEQRRKELFAKQGRGNQFLSREDRDSWITKELKTLERGVRDKETQIK
NLHDEIRDSEKMQESLQGVIADKNIKIQEHKSIMDAQTREATNLKRHKDELQGQRQRLWR
DESKIMQELDSIASEIKAKEHTLNSIIGKATFHGIESIEKVRKTFLERNQGDLVDGYYGM
LIENFRCHKNFFTCVEVTSGGKLFNHIVSTDRVGTKYLNEMNLQHLHGEVTFLPLNKLEI
RDVEYPETTDALPMITKLTYEQQYETAIKYVFGKTLICRSMEVSTQLARLHQLDCVTLEG
DQVSRRGALTGGYVDNRKSRLDLYIAKHDLKQALEEKQQEIAVNKEQQQKLEAEATKVMD
DLQKLETKNKKIKDIFDKLKVDVRMLKEQLQEQQRALEPKQRSLAIFQSNCEELKSTERS
LREEVGTNLLSQLSAEDQTEMDRLSDTIKQLSGHNKEAVGQRVRLEGKKTSLQNLLDDNL
LRRKKQLVQEMQELSVEVQKQKLEQTENDRKNTEEKLAMTDEKLKELENEIMKFEREQGS
LSAKVEELRSKERELREKITDDVRELEKVTSKQSVLLKKKEECMKKIRDLGSLPQDAFTK
YEGYSSRQLMKKLDESNLELKKYSHVNKKALDQFVSFSEEKEKLLDRKEEIYRGKQAIIF
LMDHMEQQKYEAIQFTFRQVSKNFSEVFVKLVPGGKATLVMKKGESQSQGSESDHATPSD
QPASAVDQFVGVGIKVSFSGKAAETREMRQLSGGQKSLVALALIFAIQKCDPAPFYLFDE
IDQALDPAHRTSVSNMIKELSLSAQFITTTFRPELLEAADKFYGVIHRNKVSLVRTITKE
EAREFVEDDTMHG*
Nucleotide sequence
Length: 3,627
>Haaura.CG.MTP2014.S1.g00043.01.t
CAACACATCTCATTGTAGGTAAGCATTCAGGGCTTCCGTAGTTACCGAGAATCGACAGAA
GTGGAGCCATTCAGTTCGAAGCACAACATCATTGTTGGCAGAAATGGCTCTGGAAAAAGT
AATTTTTTCAGTGCAATTCAGTTTGTCCTCAGCGATGAGTTCAGCAACTTGCGAGCAGAG
CAACGTCAGCAGTTGCTACACGAGGGAACGGGTGCCAGAGTTATATCAGCCAATGTAGAA
ATTGTGTTTGACAATTCGGACAACAGATTACCAATTGATAAAGAGGAAGTTACTCTAAGA
AGAGTGATCGGCTCCAAGAAAGATCAGTATTTTCTTGACAAGAAGATGGTTACAAAAAAT
GATGTAATGAATTTGCTTGAGTCAGCTGGATTTTCAAAAAGCAACCCCTATTACATAGTA
AAGCAAGGAAAAATCAATCAAATGGCAACGGCACCAGACTCGGACAGACTTCGCTTGTTG
CGCGAAGTCGCTGGAACTCGGGTTTACGACGAAAGGAAAAACGAAAGTCGGATACTAATG
GAAGAATCTGCGAGTAAACTTACTAAAACAGAGGAGCTTTTGACCATGATAGAGGATCGT
CTTTCTACCCTTAAGTCGGAAAAAGAGGAACTGTCCCAGTACCAGCAGTGTGATAAAACA
CGCCGGTCTCTCGAATACACAATCTTTAATCTGGATTTAACTGAAACGAAGAATAAATTG
GAAACCCTCACATATAAGAGAGAAACCAATTCAGTGCAAGCAAAGCACCTTCGTTCCCAG
CAAGAGGACGCACAGAGAAGAACTAAGGATAAGCAAAAACGATTGTCTCAAGTCAACACT
CAGATTGATCAGTTATCAGAAGAAAAAGATCAATCATCTGCTGATAGACAAGAACTTATA
AAGAAAAAGGCGCAACTGGAACTGGCATGCACGGATTTTAGAGAACAGCTAGAATCTAAT
GAGAGATCCATGATGCAAGCTCAGGCCGAATTGGGTGATTTGAATGCAAGAATTACGAAA
AAATCAGATGAGCTCACAGATGTGAAACCGCAGTACGAAGATGCTGAAAAAAGGGAGAGA
GATAGCGCAAGAGATCTCAAAGCTGCAGAACAGCGCCGCAAGGAACTATTTGCAAAACAA
GGCAGAGGAAATCAGTTCCTCTCACGTGAAGATCGTGACTCGTGGATTACAAAAGAACTG
AAGACACTCGAACGAGGCGTGCGTGACAAGGAAACTCAGATCAAAAATCTACATGATGAG
ATTCGGGATAGCGAAAAGATGCAGGAATCATTACAAGGAGTCATTGCCGACAAAAATATT
AAGATTCAAGAACATAAATCAATAATGGATGCCCAAACCAGAGAAGCTACAAATTTGAAA
AGACACAAGGATGAGCTGCAGGGTCAAAGACAAAGATTATGGAGAGACGAGTCAAAGATC
ATGCAAGAATTGGATTCAATTGCATCTGAGATTAAAGCTAAAGAACATACATTGAATTCC
ATCATCGGCAAAGCTACTTTTCACGGTATCGAGAGTATAGAAAAGGTTCGGAAAACCTTC
CTGGAACGCAATCAAGGGGACCTTGTCGATGGATACTACGGAATGCTGATAGAGAATTTT
CGTTGTCACAAAAATTTCTTCACTTGTGTTGAAGTTACTTCTGGGGGCAAGCTCTTCAAT
CATATTGTCTCCACAGATAGAGTCGGAACTAAATATCTAAATGAAATGAACTTGCAGCAT
TTACATGGCGAGGTTACTTTTCTTCCTCTGAACAAACTTGAGATAAGAGATGTGGAATAC
CCAGAGACCACGGACGCTCTTCCCATGATCACCAAACTAACGTACGAACAGCAATATGAA
ACCGCAATCAAGTATGTGTTCGGAAAAACACTCATATGTCGCAGTATGGAGGTTTCGACT
CAGCTTGCTCGACTACATCAACTGGATTGTGTTACTCTTGAAGGAGACCAAGTTTCTCGT
CGTGGTGCCCTGACAGGTGGCTATGTAGACAACAGAAAATCAAGGCTCGACCTGTACATT
GCTAAGCATGATTTGAAACAAGCTTTGGAAGAAAAGCAGCAGGAAATAGCAGTGAATAAA
GAACAGCAGCAGAAGCTTGAGGCTGAAGCCACTAAAGTAATGGATGACCTTCAGAAACTA
GAAACAAAAAATAAGAAGATCAAAGATATCTTTGACAAACTAAAAGTAGATGTCAGAATG
CTGAAAGAACAGTTGCAAGAACAGCAGCGTGCTCTGGAGCCAAAGCAACGTTCATTGGCA
ATCTTTCAAAGCAATTGCGAAGAGCTGAAGTCAACTGAAAGGTCACTCCGTGAAGAAGTC
GGGACGAATTTGCTCTCCCAGCTCTCTGCAGAAGACCAAACAGAGATGGATCGACTCAGT
GACACTATTAAGCAGTTGTCTGGGCATAATAAGGAAGCTGTAGGGCAAAGAGTGAGGCTA
GAAGGAAAAAAGACAAGCCTCCAGAATCTTCTGGATGACAATTTGCTACGTCGCAAAAAG
CAACTAGTGCAGGAAATGCAAGAATTGTCTGTCGAGGTACAGAAACAAAAGCTGGAGCAA
ACTGAAAACGACCGCAAGAACACTGAGGAAAAACTGGCTATGACAGACGAGAAACTTAAA
GAGCTCGAAAATGAAATCATGAAATTTGAGCGTGAGCAGGGTAGCTTATCTGCAAAGGTC
GAAGAACTTAGAAGTAAGGAACGTGAATTGAGAGAAAAAATTACAGATGACGTGAGGGAG
CTTGAGAAGGTCACCAGCAAACAGAGTGTGCTACTGAAAAAGAAAGAAGAATGCATGAAG
AAGATCCGTGATCTAGGCTCCCTTCCACAAGATGCTTTCACCAAATATGAAGGATACAGT
TCTAGACAATTGATGAAAAAGTTGGACGAAAGCAACCTGGAATTAAAGAAATACTCCCAC
GTCAACAAGAAAGCCCTGGATCAGTTTGTGTCATTTTCAGAAGAGAAAGAGAAACTGCTG
GACCGAAAAGAAGAGATCTATAGGGGAAAACAAGCTATTATATTTCTAATGGACCACATG
GAACAGCAAAAGTATGAAGCAATACAATTCACTTTCCGCCAAGTTTCAAAAAATTTCAGC
GAAGTCTTTGTCAAATTGGTACCCGGCGGAAAGGCAACGCTGGTCATGAAAAAGGGAGAG
TCGCAATCCCAAGGGAGTGAGAGCGATCATGCAACTCCTTCTGATCAACCAGCCTCTGCT
GTTGATCAGTTTGTAGGTGTGGGAATTAAGGTGTCCTTTTCTGGTAAAGCCGCCGAGACT
CGGGAGATGAGACAGTTATCCGGCGGACAGAAGTCTCTTGTGGCGCTTGCACTGATCTTC
GCAATTCAGAAATGTGATCCTGCTCCATTCTACTTGTTTGACGAGATTGACCAAGCATTG
GATCCTGCACACAGGACCTCAGTCTCCAACATGATCAAAGAACTAAGTCTGTCCGCGCAA
TTCATAACAACCACATTCAGACCAGAACTGCTCGAAGCTGCTGATAAATTCTATGGTGTA
ATTCACAGAAATAAGGTATCTTTGGTGCGAACCATCACCAAGGAAGAAGCACGTGAATTT
GTAGAAGATGACACAATGCATGGATGA
| PIRSF |
SMC (IPR024704) - T[1-1085] 8.7E-113 |
| Pfam |
RecF/RecN/SMC_N (IPR003395) - T[3-1071] 2.7E-18 |
| SUPERFAMILY |
SMC_hinge_sf (IPR036277) - T[367-573] 1.7E-38 |
| Pfam |
SMC_hinge (IPR010935) - T[415-527] 6.9E-18 |
| SMART |
SMC_hinge (IPR010935) - T[415-528] 6.3E-21 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[704-769] 6.57E-32 - T[860-1082] 6.57E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SMC2_HUMAN | 23.793 % | 170 | 7.77E-43 |
| SMC4_HUMAN | 20.921 % | 84.7 | 1.68E-16 |
| SMC3_HUMAN | 52.575 % | 1071 | 0 |