- Transcript 'KH2012:KH.C4.671.v1....' >
- Molecular Tool 'Msx>Ngn (Stolfi 2011)' >
- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S1.g00040.01.t
Possible name(s)
CSMD1; CSMD2; PAMR1
Gene model
Location
S1 [303,120 / 305,439]
Amino acid sequence
Length: 327
>Haaura.CG.MTP2014.S1.g00040.01.p
VIILIALILLIFLSATSCPVLPSLVGGRISLGLGLDVNTTMMFVNSSLSNFDAFNLMPVG
AEATYECIGGFVLSERATRVCMEGGRWSGVQPVCVKGCNDPGKPSHSRIISWIGIEATPE
EQRRTSEVLKSRQKHSRLPVGTVLTFECISGKFFMRGIPRRVCMANGKWSTSENPYCLPR
CGAFPGVSSKTIYRGATADSLRATSWPWHVVIKRQLREADEQRVQCGGAYIGNNLVITVA
QCVTFSSTVLPFQPHQIQVGLGVNIDDDVMYTHDVLEIIIHSDFDPILHDYDIALLVLSN
EVKLDAKGRLWPACISGDSEYLAPRM*
Nucleotide sequence
Length: 1,889
>Haaura.CG.MTP2014.S1.g00040.01.t
GTGATCATTTTAATCGCACTAATTCTCCTTATATTCTTGTCAGCAACATCATGTCCAGTT
CTTCCATCATTAGTCGGAGGACGTATTAGTTTGGGTCTCGGATTGGACGTAAATACAACA
ATGATGTTTGTCAATTCCTCGTTGTCCAACTTCGACGCCTTCAATTTAATGCCGGTAGGA
GCAGAAGCAACATATGAATGCATTGGTGGATTTGTGTTAAGTGAGCGCGCCACTCGCGTT
TGTATGGAAGGTGGTCGATGGAGTGGAGTACAACCAGTATGTGTCAAAGGGTGTAACGAT
CCTGGAAAGCCCAGCCATTCCAGGATTATATCTTGGATCGGGATAGAAGCTACTCCAGAA
GAACAGCGAAGAACCTCTGAGGTCTTGAAATCGAGGCAGAAGCACAGTCGATTACCTGTT
GGCACGGTCCTCACTTTCGAATGTATCAGTGGAAAGTTTTTCATGCGCGGTATACCGAGG
CGTGTGTGCATGGCGAATGGAAAATGGAGTACTTCCGAAAATCCGTATTGCTTGCCAAGA
TGCGGTGCGTTTCCTGGTGTTTCATCCAAAACAATTTATCGGGGAGCAACAGCTGACTCA
TTAAGAGCGACGTCATGGCCTTGGCATGTCGTAATTAAAAGACAATTACGCGAAGCAGAC
GAACAAAGAGTGCAGTGTGGAGGAGCTTATATAGGTAATAATTTGGTAATCACCGTTGCC
CAATGCGTAACTTTCTCTTCAACCGTTCTCCCTTTTCAACCTCATCAAATTCAAGTCGGT
CTGGGTGTGAATATCGACGACGACGTGATGTACACACATGATGTCCTAGAAATCATAATA
CACAGTGACTTCGATCCGATACTTCACGATTACGATATTGCCTTGCTTGTGCTTTCGAAT
GAAGTGAAACTGGATGCGAAAGGGCGACTTTGGCCTGCATGTATATCAGGAGACAGTGAA
TACTTGGCTCCAAGGATGTAGTCGAAGTCGAAAAATGATTTTAATTCAGCCATTTACTAT
ACTCCATATTCAACAGATCTCGTACACTGGTTATCGGTGAAAAGGGGATTGCATCTGCAT
GGACAGAACACCATCACCATCTTGCCGAAGGAACCGAAAACGAATTTCTCCTAGGAACAA
CTACTCCCAGTAGCAGTGACGTGATTAGCGTCGGTGGTTCCGTTAATGGCAGCGACTATA
ATGATACTAACAAAATAGCTGGAAATGTGACCGCGTTTCTGAACAAACATTCTACCACGC
CATCAACAAAGCAAAGTCAAACAGTAGAGATTAACAATAGACACGTAGGCCTGAAGCATA
CCCATGAGAAAGTAGAGTACTTCAATGTTACCAGGGAAGCAAATTCAAAATGCGAACGAG
TTTTCTTGGAAAGCCTCGTGTCTTCCAGAATGATCTGTGGATTGCAGGCCATAGTCAAAA
GCGGAAAAACAGCAGACGACAGATGCTACGAGAGGAGAGGGAACCCTTTAGTGGTTTATA
GGTCTGTGCGATATACCAAACAGGGGCGGAGAAGGCGACACAAACGTCGCTCCAAACAAA
GATATTCTAAATGTACCTCACATTCTCGACATCCACGTAGCATTGTTGGTAGGAACAAAG
TTCCTGCGGACAAAAAATCTGTTTTGAAATTGGAAAACGAATTAATCGCTGATAAGCCAG
GGAAACAAGCAGAAATAAAAAGCAAAAGTGACTTGCCCAAGCAAGTTTGGCTGCTCGAGG
GTCTCAGCAGTTGGACGGCTAGAGGTAGTTGTATAGAACGCCCGCTCAACAGGTATACGG
TTTTCGTAAAAGTTCGCGCGTTTGCGGAATGGATCGCTTTAAAAAGGAAGGAGTTGCAAG
AAAAGGGACTTTTACTACCACCGGCATGA
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[16-94] 6.759 - T[96-179] 8.789 |
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[37-94] 0.0032 - T[115-177] 0.15 |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[43-102] 2.36E-11 |
| Pfam |
Sushi_SCR_CCP_dom (IPR000436) - T[57-94] 3.7E-6 - T[136-177] 1.2E-4 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[58-95] 4.96962E-8 - T[136-177] 1.36188E-6 |
| SUPERFAMILY |
Peptidase_S1_PA (IPR009003) - T[160-319] 1.8E-25 |
| ProSiteProfiles |
Trypsin_dom (IPR001254) - T[192-317] 10.805 |
| Pfam |
Trypsin_dom (IPR001254) - T[202-306] 3.2E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAMR1_HUMAN | 28.082 % | 115 | 1.33E-28 |