- Transcript 'Harore.CG.MTP2014.S3...' >
- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S18.g00540.01.t
Possible name(s)
MID1; TRIM36; TRIM46
Gene model
Location
S18 [115,383 / 125,376]
Amino acid sequence
Length: 1,148
>Haaura.CG.MTP2014.S18.g00540.01.p
MLSTENNLTNANLRIHSSTMVDSETMSCGSTTASDITEDSLKTMENYGHLLLCPVCKEII
THPVLLPCQHSVCYGCARSQIIAAEARDPSFQGDTPPTPSRNVTPTALGNSTRMRRPLGT
SPSASSILSSSSSKRDSGIETSPSVTPCLTKGFSFMSTSSFSSIGSTETCLLRASDHDDV
SLNSDVSARSRDESKEMKLRNEQTRRMISKCYSPRRNYTARQPFNGHGNLVAKSDNSQSP
NTPESVQMVSRNEPDSNSSSVVYVTKDLVHFEACCVNDSSDDFLVKGRVNTDNNSPIPTE
KIGNQNGNMCRTPNSKGMKQKQKSTGKLPRQKSTGKISGKKSFNSKSPVSSPVSPSDIAS
ENLSRFCTPPPPMSKGIAARNCSQTTSGGMRRSLSTSTIIRSTTMRQQHGADVLKRSRVK
SLFCPTCETDIELGKLGIKGLFRNFALEAIVERFRNAAKAAVAIRCGYCKPPASDATKSC
LDCKLSYCNECYKTVHVWGTKKAQHEFVGPTNNFSRPKVMLCPEHNLEAVNMYCNRCQRS
VCRACKSRGGAHANHSVTSVKNAYKDSKDRLFKSLDILKAKKESTDGAITQLENDIKAFE
LEETSVRDEIHSTIDELHKLLEVKRTELLEKADQYARCKENAMRRDLQGLKNNLMYSSVM
AFVEEVLLETDPAYFLQTIKMVESRVNEAINHLSILPATSSTEDDVWKSWMKTEECDDVR
SMLKLYMNAAPTKKAVEELDFLLSPGIPSIDNTHAAFSASHSVTLDGNSNSYRWRLSDES
DCAEFYQINYWSNNGGFQKSTECHHMPGKLFAIPNNSKLLHQSGNVDVQIRAVNKAGVGQ
WSDRSIVSANFIRRANFFWTPTSENYLLKVTDDGKTVKVIAKECLEPFGTDFLFLTGNIE
LEGGRQYFEVEASGTAEFQFAIGVANLKIKNSPCLHGSVDFCEVLTPESSALLYCGPKDC
YVVNCSGRELGSLPRGRLTFTQSYVVGNSKEKQKTSAFSSLKPLKQLKNTILRRSSKTIH
DEKSFVSCHFRSIADGSYGLAPSVELARSSSVTSLPSMLRSQSPVSIDGGSDYGQPPSQW
NMRAQIGRRCFRIGVEIMAADDNQTEVRFYDVYSQSNLLFTKTITTKYPVNPVLAVYGEG
HVSKNYT*
Nucleotide sequence
Length: 3,546
>Haaura.CG.MTP2014.S18.g00540.01.t
ATGCTGAGCACTGAGAACAATCTCACTAACGCGAACTTGCGGATACATTCCTCGACGATG
GTCGACAGTGAAACCATGTCATGTGGTTCAACCACAGCTTCTGATATTACTGAAGATTCA
CTAAAAACGATGGAAAACTACGGGCACCTCTTGCTATGCCCGGTTTGCAAAGAGATTATC
ACGCATCCCGTCCTCTTACCGTGCCAACACAGCGTTTGCTACGGATGTGCGAGATCGCAA
ATCATAGCAGCCGAAGCAAGAGATCCATCTTTCCAAGGTGACACTCCGCCAACACCCAGT
CGTAATGTCACACCCACTGCACTGGGAAATTCGACAAGGATGCGCCGACCTCTCGGCACG
TCGCCATCGGCGTCCTCCATATTATCGTCGTCTTCTTCAAAACGAGACAGTGGAATCGAA
ACATCACCATCTGTTACCCCCTGTTTGACGAAAGGATTCTCGTTCATGTCAACTTCATCT
TTCTCATCAATTGGCTCAACCGAGACTTGTCTCCTGCGTGCGTCAGATCACGATGACGTA
TCTCTTAATAGCGACGTATCTGCAAGAAGCAGAGACGAAAGCAAAGAAATGAAATTACGA
AATGAGCAGACTAGACGGATGATATCGAAATGCTATTCACCTCGTCGCAACTATACCGCT
AGACAACCGTTCAACGGTCATGGTAATCTCGTAGCTAAATCGGATAATTCGCAATCTCCT
AATACACCGGAATCTGTACAAATGGTTTCAAGAAATGAACCTGACAGTAACAGTTCTTCG
GTGGTATACGTCACGAAAGATCTCGTACATTTCGAGGCTTGTTGCGTCAATGATAGCAGC
GATGATTTCCTTGTGAAAGGAAGAGTGAACACCGATAATAATTCACCCATACCAACAGAG
AAAATTGGCAACCAAAATGGGAACATGTGCAGAACACCAAATTCGAAAGGAATGAAACAA
AAACAGAAGTCTACTGGCAAACTTCCTCGACAAAAATCAACTGGAAAGATATCGGGAAAG
AAGTCATTTAATTCGAAAAGTCCAGTTTCTAGTCCAGTTTCGCCGTCTGATATAGCTAGC
GAAAATCTATCGAGATTCTGTACGCCGCCACCGCCTATGAGCAAAGGTATCGCTGCGCGT
AATTGCTCTCAGACGACATCTGGCGGAATGCGTCGTAGTCTTTCGACTTCTACTATTATT
AGGTCAACCACAATGCGTCAACAGCACGGAGCCGATGTCTTGAAACGCAGCAGGGTGAAA
TCCCTTTTCTGTCCAACCTGTGAAACCGATATTGAATTAGGAAAGCTGGGAATCAAAGGA
CTTTTTCGAAATTTTGCACTTGAAGCGATCGTCGAGCGTTTTCGAAACGCTGCAAAAGCT
GCGGTCGCCATACGTTGCGGTTACTGCAAACCTCCAGCGTCGGACGCTACAAAATCTTGT
TTGGATTGTAAGTTGAGTTATTGCAACGAGTGTTACAAAACCGTGCATGTCTGGGGAACG
AAGAAAGCGCAACATGAATTTGTGGGACCGACAAATAACTTTTCCCGGCCTAAGGTTATG
CTCTGTCCAGAACATAATTTGGAAGCTGTGAATATGTACTGCAATCGATGTCAGAGATCC
GTTTGTCGAGCGTGTAAATCACGAGGCGGTGCTCACGCAAACCATTCGGTTACTTCGGTT
AAAAACGCCTACAAAGATAGCAAAGATCGGTTATTCAAATCGCTCGACATATTGAAAGCT
AAAAAAGAATCTACGGATGGTGCAATTACTCAACTTGAAAATGATATCAAGGCATTCGAG
TTAGAAGAAACTTCTGTTCGGGATGAAATTCACAGCACAATTGACGAGCTACATAAACTA
CTCGAAGTAAAAAGAACAGAACTACTGGAAAAAGCTGACCAGTATGCTCGATGCAAAGAA
AATGCTATGAGACGGGATCTCCAAGGATTAAAGAACAACTTGATGTACTCTAGTGTTATG
GCCTTTGTTGAAGAAGTTCTTCTGGAGACAGATCCCGCCTACTTCCTGCAAACTATAAAA
ATGGTGGAGTCGCGGGTTAATGAAGCTATTAATCATCTTTCGATTTTACCGGCGACATCA
TCGACCGAAGACGACGTTTGGAAATCGTGGATGAAAACAGAGGAATGCGATGATGTACGA
TCGATGCTCAAACTTTATATGAACGCTGCGCCAACTAAAAAAGCCGTAGAAGAATTAGAT
TTTCTACTAAGTCCTGGCATTCCAAGTATCGATAATACGCATGCTGCATTTTCTGCGTCG
CACTCCGTGACGCTCGATGGAAATAGTAACTCGTATAGATGGAGACTAAGCGATGAGTCA
GATTGTGCCGAATTTTACCAAATCAATTACTGGTCAAATAACGGAGGTTTTCAAAAAAGC
ACAGAATGTCATCATATGCCAGGCAAATTATTTGCTATTCCCAATAACAGCAAGTTGCTA
CATCAAAGTGGAAACGTCGACGTTCAAATTCGAGCGGTTAACAAGGCCGGTGTTGGACAA
TGGAGTGATAGAAGCATCGTGTCAGCAAATTTCATAAGGCGTGCCAACTTCTTCTGGACT
CCAACGAGCGAGAATTACTTACTCAAGGTTACAGATGATGGTAAAACTGTGAAAGTTATT
GCAAAGGAATGTTTAGAACCTTTCGGAACAGATTTTCTATTTCTGACAGGAAACATTGAA
TTGGAGGGAGGAAGGCAGTATTTTGAAGTCGAGGCAAGTGGAACGGCTGAATTCCAGTTT
GCTATCGGCGTAGCAAATCTGAAAATAAAAAATTCACCCTGTTTGCATGGATCGGTCGAT
TTTTGTGAAGTGCTGACTCCGGAAAGCTCTGCATTGCTGTATTGTGGTCCTAAAGACTGC
TACGTGGTGAACTGTTCTGGAAGGGAGCTGGGAAGTTTACCTCGGGGCAGACTAACCTTC
ACGCAATCCTATGTAGTTGGAAACAGCAAAGAAAAGCAGAAAACTTCTGCGTTTTCTTCT
CTTAAACCGCTGAAACAATTAAAAAATACGATATTGCGACGAAGTAGTAAAACTATTCAC
GATGAGAAGAGCTTTGTCAGTTGCCATTTCCGAAGTATAGCAGACGGAAGTTATGGGTTA
GCTCCATCTGTAGAGTTGGCTCGTTCTTCGTCAGTTACATCGCTGCCGTCGATGCTGCGT
TCCCAGTCGCCTGTTTCGATCGATGGTGGCTCAGATTACGGTCAGCCACCGTCGCAATGG
AACATGAGGGCTCAAATCGGCCGGCGTTGCTTTAGAATTGGAGTTGAAATTATGGCTGCA
GATGACAATCAAACCGAGGTTCGTTTTTACGACGTCTATTCGCAATCAAACCTTCTCTTC
ACTAAAACTATAACCACAAAATACCCTGTTAATCCAGTCTTGGCTGTGTACGGAGAAGGA
CATGTTTCAAAAAATTATACTTAACCCCCGGTTTATTTGAATCTGTATCAATTCTGCTGT
ATTTCTATATGCTTTTTCATATTTAAGCTGGTGACCGACAGCTATGACTTTCTATTTCTA
TGCTAA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[32-92] 9.8E-9 |
| Pfam |
Znf-RING_LisH (IPR027370) - T[53-78] 5.9E-7 |
| SMART |
Znf_RING (IPR001841) - T[53-151] 1.7E-4 |
| SMART |
Znf_B-box (IPR000315) - T[461-510] 4.0 - T[517-560] 2.2E-5 |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[517-560] 11.263 |
| Pfam |
Znf_B-box (IPR000315) - T[518-559] 5.3E-8 |
| CDD |
Znf_B-box (IPR000315) - T[521-560] 3.48066E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRI18_HUMAN | 25.725 % | 132 | 1.42E-31 |
| TRI36_HUMAN | 44.027 % | 256 | 2.3E-72 |
| TRI46_HUMAN | 30.769 % | 233 | 2.25E-64 |