- Transcript 'Cisavi.CG.ENS81.R60....' >
- Clone 'cien44958' >
- Transcript 'KH2012:KH.C12.398.v1...' >
- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S178.g03025.01.t
Possible name(s)
TRAF3; TRAF5; TRAF6
Gene model
Location
S178 [29,148 / 32,081]
Amino acid sequence
Length: 559
>Haaura.CG.MTP2014.S178.g03025.01.p
MQMNSTSYRSESAPQAATTMQEGLEGYDYEFVPSLDNKHMCPICLLALRDPVQTECGHRF
CQPCISRSLEHQKKCPVDNDPLTTNQLFQDKYAHREVLDLKVKCNNKGCDFVSELRLIEN
HEEMCEMRKIPCKNMCGLWLLSQDAVFHEENQCPRRPVSCDVCSQTYPLIAEEQHKDECK
QHQPVKCPHCTHELKLYKLQSHITIECLQAPIKCVFQRVGCQQELPRHSIKEHMEQSTQI
HLQYLLSTVSQLSKNNTELSGTLEDIVTRTNQLERDDSKYDTNSGNIELYNHGLENGLDK
GHGDLEEIDEIALIKEFNHQMEMESSNNQAGVSSVEPSSIRPGQDAARNNETEERIISLD
HHVRELMAKMENQITTTRDLSTKLTQIEQRMMQQELRCCNGLYYWKIRDYSRLRRSASAG
ELPVLHSPGFYTSPQGYRICIRVNLDGVESAQGTHLSLFVHLMKGENDELLNWPFAGVIT
LTVVNQRDLPEKRSHISETLHARSNLMAFQKPRTERNQKGYGYIDFFPLNMIESEGFIKN
DALVIKAQVTVETPTAGT*
Nucleotide sequence
Length: 1,677
>Haaura.CG.MTP2014.S178.g03025.01.t
ATGCAAATGAATTCGACATCGTATAGATCGGAATCAGCTCCACAAGCAGCCACAACAATG
CAAGAGGGCCTGGAAGGATACGATTATGAGTTTGTTCCAAGCCTCGATAATAAACATATG
TGTCCTATATGTTTATTGGCATTGAGAGATCCTGTTCAGACTGAATGTGGACATAGGTTC
TGTCAGCCTTGTATCTCTAGATCATTAGAGCATCAAAAAAAATGTCCAGTGGATAATGAC
CCTCTCACAACCAACCAACTATTTCAAGACAAGTACGCTCATCGAGAGGTGTTAGATTTA
AAAGTCAAATGCAATAACAAAGGCTGCGATTTTGTGTCAGAACTACGGCTCATAGAGAAC
CATGAAGAGATGTGTGAAATGAGAAAAATTCCATGTAAAAATATGTGCGGTTTGTGGCTT
CTTTCACAAGACGCAGTTTTCCATGAAGAGAACCAGTGTCCCCGGCGACCGGTGTCGTGC
GACGTCTGCAGCCAAACTTATCCGTTAATAGCGGAAGAGCAACACAAAGATGAATGCAAG
CAGCATCAACCTGTGAAATGTCCTCATTGCACACATGAATTAAAATTGTACAAGTTACAA
TCTCACATAACCATAGAATGTCTCCAAGCACCAATCAAATGTGTATTTCAAAGAGTAGGA
TGCCAGCAAGAGCTACCACGGCACAGTATAAAAGAACATATGGAACAGTCAACCCAAATA
CATTTGCAATACTTATTAAGCACTGTCAGTCAACTAAGCAAAAACAACACGGAACTCTCC
GGCACACTGGAAGACATTGTAACGCGCACAAACCAACTTGAAAGAGATGATAGCAAATAT
GATACTAATAGCGGAAACATTGAACTTTACAATCATGGTTTAGAGAATGGATTGGATAAA
GGTCATGGCGATTTGGAAGAAATTGATGAAATAGCTTTGATTAAAGAATTCAATCACCAA
ATGGAGATGGAAAGCTCAAACAATCAAGCGGGAGTTTCATCGGTAGAGCCAAGCAGTATC
AGACCGGGTCAGGATGCAGCTAGAAACAATGAGACTGAGGAACGAATTATCAGTCTGGAC
CACCACGTAAGAGAACTGATGGCCAAGATGGAAAATCAGATAACGACTACACGTGATTTG
TCCACAAAGCTTACCCAGATTGAGCAAAGAATGATGCAGCAAGAATTAAGGTGCTGTAAC
GGTTTGTATTATTGGAAAATACGAGACTACAGCAGACTGCGCCGTTCTGCTTCTGCTGGT
GAATTACCTGTCCTCCACAGTCCGGGATTCTACACAAGCCCTCAAGGTTACCGTATCTGC
ATTCGAGTCAACTTGGACGGAGTGGAGAGCGCACAGGGGACCCACCTTTCTTTATTTGTG
CATTTAATGAAAGGTGAAAATGATGAACTTCTTAACTGGCCCTTCGCAGGTGTTATTACT
TTGACAGTAGTTAATCAGAGAGATTTACCTGAGAAACGATCACACATATCTGAAACTCTT
CATGCTCGCTCGAACCTGATGGCGTTCCAAAAACCAAGGACTGAGCGCAATCAGAAGGGA
TATGGATACATCGACTTTTTCCCACTAAACATGATCGAGAGCGAAGGGTTTATCAAAAAT
GATGCCTTGGTCATTAAGGCACAAGTTACTGTTGAGACACCAACGGCTGGAACTTGA
| PIRSF |
TNF_rcpt--assoc_TRAF (IPR012227) - T[4-556] 2.6E-116 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[22-132] 2.4E-29 - T[133-183] 5.4E-5 - T[184-242] 2.6E-6 |
| SMART |
Znf_RING (IPR001841) - T[41-78] 3.1E-8 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[41-79] 11.737 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[56-65] . |
| SUPERFAMILY |
TRAF-like (IPR008974) - T[100-170] 4.84E-6 - T[185-243] 5.3E-9 - T[399-552] 9.32E-40 |
| ProSiteProfiles |
Znf_TRAF (IPR001293) - T[148-231] 10.815 |
| Pfam |
Znf_TRAF (IPR001293) - T[175-233] 8.4E-6 |
| Gene3D |
TRAF-like (IPR008974) - T[363-555] 1.2E-59 |
| ProSiteProfiles |
MATH/TRAF_dom (IPR002083) - T[400-549] 24.635 |
| SMART |
MATH/TRAF_dom (IPR002083) - T[405-532] 7.8E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRAF3_HUMAN | 30.657 % | 213 | 8.74E-62 |
| TRAF5_HUMAN | 29.314 % | 201 | 1.41E-57 |
| TRAF6_HUMAN | 33.394 % | 293 | 1.17E-92 |