- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S169.g02911.01.t
Possible name(s)
TRIM2; TRIM3; TRIM71
Gene model
Location
S169 [4,067 / 4,898]
Amino acid sequence
Length: 277
>Haaura.CG.MTP2014.S169.g02911.01.p
MFGSEGEKDGQLCRPWGIACDSRGYFVVADRSNNRIQIFTPDGSFLRKFGNPGKRPGQLD
RPAGVVVDQDHRIILADKDNHRIQIFTFNGNFLLMFGERGSKNGQFNYPWDVASDSRGMI
AVTDTRNHRVQLFNSEGMFISKYGFEGMMWKHFDSPRGIDFISNTSALVVSDFNNHRLVI
IQPDLRSARFLGSEGSQPSQFLRPQGVAVDEDGNFVIADSRNHRLQVFSPSGTFIAMLGG
TQGNGPNQMDRPSGIAIMPNAGIAVVDFGNNRILVY*
Nucleotide sequence
Length: 831
>Haaura.CG.MTP2014.S169.g02911.01.t
ATGTTCGGGAGTGAAGGGGAAAAAGACGGGCAACTTTGTAGACCATGGGGCATCGCTTGC
GATTCTCGTGGTTACTTTGTTGTCGCAGACAGAAGCAATAACAGAATTCAGATTTTCACA
CCAGATGGTAGTTTCCTGAGAAAATTTGGCAACCCAGGAAAGCGGCCCGGTCAGCTCGAC
AGACCGGCCGGTGTCGTGGTCGACCAGGACCATCGTATTATCTTAGCGGACAAGGATAAT
CATCGTATACAGATTTTCACGTTCAACGGGAATTTCTTGCTCATGTTTGGTGAAAGAGGT
TCTAAGAATGGACAGTTCAATTATCCCTGGGACGTCGCCTCGGACTCCAGAGGCATGATA
GCCGTGACAGATACCCGCAATCACAGAGTACAGCTGTTCAATAGCGAAGGTATGTTTATC
AGTAAGTATGGGTTTGAAGGGATGATGTGGAAACATTTCGATTCACCTCGGGGAATCGAT
TTTATTTCAAACACATCAGCTCTGGTTGTTTCCGATTTTAACAACCACCGACTTGTCATC
ATCCAACCTGACCTTAGGTCGGCTCGTTTCTTAGGCTCGGAGGGTTCTCAACCCTCTCAG
TTTTTGCGTCCTCAGGGTGTGGCAGTAGATGAAGATGGGAATTTTGTCATCGCTGACTCT
AGAAACCATAGGTTGCAGGTCTTTTCGCCTTCTGGCACATTTATCGCTATGCTTGGAGGT
ACACAGGGTAACGGACCGAATCAAATGGACCGTCCTTCGGGCATAGCCATTATGCCCAAT
GCTGGCATAGCTGTGGTTGATTTCGGAAACAACCGCATTTTGGTGTACTAG
| ProSiteProfiles |
NHL_repeat_subgr (IPR013017) - T[1-42] 16.551 - T[46-89] 14.186 - T[96-136] 15.954 - T[140-184] 9.355 - T[188-231] 16.509 - T[243-276] 8.471 |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[1-91] 5.4E-34 - T[92-189] 8.3E-21 - T[190-276] 4.7E-26 |
| Pfam |
NHL_repeat (IPR001258) - T[12-39] 3.0E-7 - T[59-86] 6.0E-8 - T[106-131] 1.4E-7 - T[201-228] 3.3E-10 - T[251-276] 4.0E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LIN41_HUMAN | 66.545 % | 410 | 2.83E-138 |
| TRIM2_HUMAN | 33.212 % | 149 | 8.35E-41 |
| TRIM3_HUMAN | 35.401 % | 157 | 9.33E-44 |
