- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Boleac.CG.SB_v3.S22....' >
- Molecular Tool 'p10.27::NICD' >
- Transcript 'Phfumi.CG.MTP2014.S7...' >
- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S166.g02899.01.t
Possible name(s)
NCL; PABPC5; SART3
Gene model
Location
S166 [74,843 / 82,812]
Amino acid sequence
Length: 943
>Haaura.CG.MTP2014.S166.g02899.01.p
MEVDDKEDTNEVATEEAATMDKNMSKDSDDDDEMDEDEDILQKLNEKLSTSPYDYQSHLD
LITQLRKMGELEKLREARTNMAAIFPLTTAIWLEWIEDERKFTEGEDDTRMVKLFEKAVK
DYICPDIWFEYVQFAMGWIGTEDGQNKIREVMERALIAVGIHVVSGAMLWDTYREFENTV
LMTLQPAPGSVPSTIEQEKINTQMKRLKSVFKRQLVVPLLDMNSTLLEYSRWVSEDLDPG
MQKSVEQTLKKMNEIQKYEDALLISSPPELSEYQKYIDHEKKCGNPIRVQCIYERAIGDH
CLDSELWIQYLDYLVKHLKHSNLVLEVNHRSVRNCPWTGRLWILYMIELERNDTPQTEMK
MVFEEALAAGFMTAYEYFDLWRTRCEQLRRRLNSGDNDAQGKEELRECFVRATDHLLNTV
NQAFHSTGDANYTMWTYYAKCEASCLGDKEKAVKVLETLFADVPIAKKKFLIWLEYYNIE
RLYGGADKLEQCRSILRRAVQNCGIVPDDGVAEKSDAEKACEALMDFEREFGTLDDYDES
LKRVDGKLFRIKKRWDQLESAAAQSTRDKNQNKNKKKSNARDAGRKRKYPEDASNARGEQ
NSSYEKFSKRPRQAEGGQSPRRDGFKAPTGLPARYSKTTASPTRTTATPEALPTSTPPPG
FKSPPPPGFKPGPDASMDTNNNPDQGQMKERPGSSLEESKRTVFISNLDFKTPNVEEKLR
TIFCDCGKIVEVRIAKSNTGKFRGFCFMLFEDAVAAQKALLLDRQAIDNRPMYVSPHVDK
NKNPDSKIFRYNTGMEKHKLFISNVSLNTTRETLEKEFSPHGKLTNVRIVTNRSGKPKGI
AYVEYENQSDASQAVLKMDMKEIDGSTIEVAISNPPSRRQDKDQKDRFLGGRGRGRTQLS
NFRSSARKPGDMDNGTNPDEAEPSTSSGGLSNKDFAAMLLKK*
Nucleotide sequence
Length: 2,829
>Haaura.CG.MTP2014.S166.g02899.01.t
ATGGAGGTAGACGATAAGGAAGATACAAATGAAGTTGCAACCGAGGAAGCGGCGACTATG
GATAAAAATATGTCGAAAGATTCTGACGATGATGACGAAATGGATGAAGATGAAGATATT
TTACAAAAATTGAATGAAAAGCTTTCGACTTCACCATATGACTATCAGAGTCACCTCGAT
CTTATCACACAGTTACGCAAAATGGGAGAGTTAGAAAAACTGCGTGAAGCTCGTACAAAT
ATGGCTGCAATATTTCCTCTTACTACGGCCATCTGGTTGGAATGGATTGAAGATGAAAGA
AAGTTTACTGAGGGTGAAGATGACACTAGGATGGTTAAACTCTTTGAAAAAGCTGTCAAA
GATTATATATGTCCTGATATTTGGTTTGAGTATGTACAGTTTGCAATGGGATGGATAGGT
ACCGAAGACGGCCAAAATAAAATTCGGGAAGTTATGGAGAGAGCGTTGATTGCAGTCGGT
ATTCATGTTGTAAGTGGAGCAATGCTGTGGGATACCTACAGAGAATTTGAAAACACTGTC
TTAATGACATTGCAGCCTGCTCCTGGCAGTGTGCCTTCAACCATCGAACAAGAGAAGATA
AACACTCAAATGAAGCGATTGAAATCTGTGTTCAAACGACAACTTGTTGTTCCTTTGCTT
GATATGAATAGCACTTTGTTGGAGTACAGTCGGTGGGTCTCCGAAGATCTCGACCCTGGA
ATGCAAAAGTCTGTCGAACAAACTTTGAAAAAAATGAATGAAATACAAAAATACGAGGAT
GCTTTGTTGATCTCCTCGCCTCCAGAGCTGTCTGAATATCAAAAGTACATAGACCACGAG
AAGAAATGTGGCAATCCTATTCGAGTGCAGTGCATATATGAACGTGCCATCGGTGACCAC
TGTCTCGATTCTGAGCTGTGGATTCAATATCTTGACTATTTAGTCAAGCATTTGAAGCAT
AGCAACCTAGTTCTTGAAGTTAATCACAGATCGGTACGTAACTGCCCATGGACCGGTCGC
CTCTGGATTTTATACATGATAGAATTGGAAAGGAATGACACTCCACAGACTGAGATGAAA
ATGGTATTTGAGGAAGCTCTGGCTGCGGGTTTTATGACCGCGTATGAATATTTTGACTTG
TGGAGGACGAGGTGCGAGCAGCTTCGAAGGCGTTTAAACTCCGGGGATAACGATGCACAG
GGAAAAGAAGAACTGAGAGAATGTTTTGTAAGAGCAACTGACCATCTACTAAACACAGTC
AACCAAGCATTCCATAGTACTGGTGATGCCAACTATACAATGTGGACCTACTACGCGAAG
TGCGAAGCTAGTTGCCTCGGCGACAAAGAAAAAGCCGTGAAGGTATTGGAAACATTATTT
GCAGATGTGCCAATCGCCAAGAAGAAATTTCTCATCTGGTTGGAATATTATAATATCGAA
AGGCTCTATGGTGGTGCTGATAAATTGGAGCAATGCAGATCGATATTAAGAAGAGCTGTT
CAGAATTGCGGGATAGTGCCGGATGATGGTGTCGCTGAAAAGTCAGATGCAGAGAAAGCT
TGTGAAGCTTTGATGGATTTTGAAAGAGAATTTGGCACCTTGGATGATTATGACGAGTCT
CTGAAGCGGGTCGACGGGAAATTGTTTAGAATTAAGAAGCGCTGGGATCAGCTGGAATCG
GCTGCAGCTCAGTCCACACGGGATAAAAACCAGAATAAGAACAAGAAAAAATCAAATGCT
AGAGATGCGGGAAGAAAACGAAAGTATCCAGAAGATGCTAGTAATGCACGGGGTGAGCAA
AATTCCAGCTATGAGAAGTTTTCGAAACGTCCCAGACAAGCAGAAGGTGGTCAGTCTCCT
CGTAGAGATGGATTCAAAGCTCCAACAGGTCTTCCTGCAAGGTATTCAAAAACAACAGCT
TCACCAACAAGGACTACTGCAACACCAGAAGCTCTACCAACTTCTACTCCTCCACCTGGT
TTCAAAAGTCCACCACCTCCAGGTTTCAAACCGGGACCAGATGCTTCAATGGATACAAAT
AATAATCCAGACCAAGGGCAAATGAAGGAAAGGCCAGGCTCCTCTCTCGAAGAATCTAAA
AGAACTGTGTTCATAAGCAATCTTGATTTCAAAACTCCGAACGTTGAGGAAAAACTGAGA
ACCATTTTCTGCGACTGTGGTAAGATAGTCGAAGTACGCATCGCTAAAAGCAACACTGGA
AAGTTCAGAGGTTTTTGCTTCATGCTGTTTGAAGACGCTGTTGCCGCGCAGAAAGCATTG
CTGTTAGATCGTCAGGCAATTGATAATCGGCCAATGTATGTCTCCCCTCACGTTGATAAA
AACAAGAATCCTGATTCTAAGATTTTCAGATACAATACTGGAATGGAGAAACACAAATTG
TTCATTTCTAATGTGTCTTTGAACACAACGCGAGAGACACTGGAAAAAGAGTTTTCTCCA
CACGGAAAATTGACTAACGTACGGATTGTCACGAACCGTAGCGGAAAGCCTAAGGGTATC
GCTTATGTAGAATATGAGAATCAGTCTGATGCTTCCCAGGCAGTATTGAAAATGGATATG
AAGGAGATTGATGGATCTACTATTGAGGTAGCTATCAGTAATCCCCCCTCAAGAAGACAA
GACAAGGATCAGAAAGACCGTTTCCTAGGAGGGAGAGGTCGTGGTCGAACTCAGCTGAGT
AATTTTAGAAGCTCTGCGAGAAAGCCTGGTGATATGGATAACGGAACGAACCCAGATGAG
GCGGAACCTTCCACGTCTTCTGGCGGCCTAAGCAATAAGGATTTTGCCGCCATGTTGTTA
AAAAAATGA
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[44-247] 5.4E-42 - T[268-576] 9.2E-35 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[47-543] 4.55E-48 |
| SMART |
HAT (IPR003107) - T[69-101] 97.0 - T[106-137] 0.037 - T[143-179] 62.0 - T[284-316] 0.058 - T[447-482] 38.0 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[670-788] 1.7E-20 - T[790-908] 7.1E-25 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[695-784] 1.05E-19 - T[796-903] 1.88E-25 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[701-779] 15.204 - T[798-875] 17.489 |
| SMART |
RRM_dom (IPR000504) - T[702-775] 3.6E-14 - T[799-871] 6.6E-22 |
| CDD |
SART3_RRM1 (IPR034217) - T[702-775] 7.86768E-29 |
| Pfam |
RRM_dom (IPR000504) - T[703-772] 1.4E-11 - T[800-868] 1.0E-16 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SART3_HUMAN | 36.511 % | 597 | 0 |