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TRANSCRIPT CARD

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  1. Transcript 'Haaura.CG.MTP2014.S1...'
  2. Transcript 'Haaura.CG.MTP2014.S1...'
  3. Transcript 'Haaura.CG.MTP2014.S1...'
  4. Transcript 'KH2012:KH.C9.220.v2....'
  5. Transcript 'Haaura.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S1447.g08347.03.t

Possible name(s)

TRIM2; TRIM3; TRIM71

Location

S1447 [12,806 / 14,424]

Sequences

Amino acid sequence

Length: 236

>Haaura.CG.MTP2014.S1447.g08347.03.p
CFGMKGSDNGCLNWPRGIAATSEGNIIVADSSNHRVQIFDSSGISVHSFGSYGSGDGEFD
CLAGVCVTTQGWIITSDRYNHRIQIFDSQGRFIRMFGEEGSGEGELSYPWGVATDSMGFI
YVCDKDNHRIQVFTLDGGFIRKFGRVGSYDAQFDSPQYIAVSHDSKVIVGDSGNHRVQVF
DKYGRFLYKFGTEGSIDGQFKYPRGVATDQHGNIIVGDSGNNRVQVSEISHSLQLS

Nucleotide sequence

Length: 708

>Haaura.CG.MTP2014.S1447.g08347.03.t
TGTTTTGGAATGAAAGGAAGTGACAACGGATGCTTGAATTGGCCGAGAGGGATCGCAGCG
ACATCAGAAGGAAATATTATAGTCGCAGACAGCAGCAATCACAGAGTTCAAATCTTTGAC
TCGTCCGGTATATCCGTCCACTCCTTTGGCAGCTATGGCAGCGGTGACGGGGAATTCGAC
TGCTTGGCAGGAGTCTGTGTGACCACGCAAGGCTGGATTATAACCTCGGATCGTTACAAC
CACAGAATCCAGATATTTGACAGCCAGGGACGATTTATTCGGATGTTTGGGGAGGAAGGA
TCTGGTGAAGGAGAACTGAGTTACCCATGGGGTGTTGCAACTGACAGCATGGGATTTATT
TACGTCTGTGATAAAGACAATCATCGAATACAGGTTTTCACACTGGACGGAGGTTTCATT
CGAAAGTTTGGACGAGTTGGATCGTACGATGCTCAGTTTGATAGTCCGCAGTATATCGCT
GTATCACATGATAGCAAGGTGATCGTCGGGGACAGCGGCAATCACAGAGTTCAAGTTTTC
GATAAATATGGAAGATTTCTCTACAAGTTCGGGACGGAAGGTTCGATCGACGGTCAGTTC
AAATATCCACGAGGTGTCGCTACAGATCAGCATGGAAATATCATCGTTGGAGACAGCGGA
AATAACAGAGTTCAAGTAAGTGAAATCTCACATTCATTACAGTTGAGC

InterProScan

ProSiteProfiles
NHL_repeat_subgr (IPR013017) - T[1-42] 17.044 - T[46-89] 14.926 - T[96-136] 15.79 - T[140-183] 12.891 - T[187-226] 13.282
Gene3D
6-blade_b-propeller_TolB-like (IPR011042) - T[1-93] 6.1E-32 - T[94-193] 3.0E-37
Pfam
NHL_repeat (IPR001258) - T[12-39] 7.3E-10 - T[59-86] 6.6E-6 - T[106-133] 1.1E-10 - T[153-180] 9.6E-5 - T[200-226] 1.2E-7

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LIN41_HUMAN 45.957 % 205 3.52E-61
TRIM2_HUMAN 39.732 % 152 1.4E-42
TRIM3_HUMAN 38.528 % 161 1.38E-45