- Transcript 'Haaura.CG.MTP2014.S1...' >
- Transcript 'Haaura.CG.MTP2014.S1...' >
- Transcript 'Haaura.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C9.220.v2....' >
- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S1447.g08347.03.t
Possible name(s)
TRIM2; TRIM3; TRIM71
Gene model
Location
S1447 [12,806 / 14,424]
Amino acid sequence
Length: 236
>Haaura.CG.MTP2014.S1447.g08347.03.p
CFGMKGSDNGCLNWPRGIAATSEGNIIVADSSNHRVQIFDSSGISVHSFGSYGSGDGEFD
CLAGVCVTTQGWIITSDRYNHRIQIFDSQGRFIRMFGEEGSGEGELSYPWGVATDSMGFI
YVCDKDNHRIQVFTLDGGFIRKFGRVGSYDAQFDSPQYIAVSHDSKVIVGDSGNHRVQVF
DKYGRFLYKFGTEGSIDGQFKYPRGVATDQHGNIIVGDSGNNRVQVSEISHSLQLS
Nucleotide sequence
Length: 708
>Haaura.CG.MTP2014.S1447.g08347.03.t
TGTTTTGGAATGAAAGGAAGTGACAACGGATGCTTGAATTGGCCGAGAGGGATCGCAGCG
ACATCAGAAGGAAATATTATAGTCGCAGACAGCAGCAATCACAGAGTTCAAATCTTTGAC
TCGTCCGGTATATCCGTCCACTCCTTTGGCAGCTATGGCAGCGGTGACGGGGAATTCGAC
TGCTTGGCAGGAGTCTGTGTGACCACGCAAGGCTGGATTATAACCTCGGATCGTTACAAC
CACAGAATCCAGATATTTGACAGCCAGGGACGATTTATTCGGATGTTTGGGGAGGAAGGA
TCTGGTGAAGGAGAACTGAGTTACCCATGGGGTGTTGCAACTGACAGCATGGGATTTATT
TACGTCTGTGATAAAGACAATCATCGAATACAGGTTTTCACACTGGACGGAGGTTTCATT
CGAAAGTTTGGACGAGTTGGATCGTACGATGCTCAGTTTGATAGTCCGCAGTATATCGCT
GTATCACATGATAGCAAGGTGATCGTCGGGGACAGCGGCAATCACAGAGTTCAAGTTTTC
GATAAATATGGAAGATTTCTCTACAAGTTCGGGACGGAAGGTTCGATCGACGGTCAGTTC
AAATATCCACGAGGTGTCGCTACAGATCAGCATGGAAATATCATCGTTGGAGACAGCGGA
AATAACAGAGTTCAAGTAAGTGAAATCTCACATTCATTACAGTTGAGC
| ProSiteProfiles |
NHL_repeat_subgr (IPR013017) - T[1-42] 17.044 - T[46-89] 14.926 - T[96-136] 15.79 - T[140-183] 12.891 - T[187-226] 13.282 |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[1-93] 6.1E-32 - T[94-193] 3.0E-37 |
| Pfam |
NHL_repeat (IPR001258) - T[12-39] 7.3E-10 - T[59-86] 6.6E-6 - T[106-133] 1.1E-10 - T[153-180] 9.6E-5 - T[200-226] 1.2E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LIN41_HUMAN | 45.957 % | 205 | 3.52E-61 |
| TRIM2_HUMAN | 39.732 % | 152 | 1.4E-42 |
| TRIM3_HUMAN | 38.528 % | 161 | 1.38E-45 |