Aniseed - Transcript Card

Transcript 'Haaura.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S1447.g08347.01.t

Possible name(s)

TRIM2; TRIM3; TRIM71

Gene model

Haaura.CG.MTP2014.S1447.g08347

Location

S1447 [9,353 / 13,162]

Sequences

Amino acid sequence

Length: 356

>Haaura.CG.MTP2014.S1447.g08347.01.p
MLIDEVDAFVAMETRSLQVEQENLEVELATMSSFCENAEQRNKIFDEVSESIPANTRRQQ
QSETLQLTRQSREHLRNNRLVTNNIEDKIGRTIKFRKEGERSLLCSISDFGDVSFHVPSR
VSMTFGSDLTMNEAEIQRVMLDDYSPRYGRRADRIEEQPPTFISPSPGSTDTSSPAPTST
QTINNDSQRNQTDPDTAANRLRGNRNRRGRGRLISQTPSYFTIGNSRPANNSTVSRSDLS
PHVTGIRTTLWQYRSKGPVKCCFGMKGSDNGCLNWPRGIAATSEGNIIVADSSNHRVQIF
DSSGISVHSFGSYGSGDGEFDCLAGVCVTTQGWIITSDRYNHRIQIFDSQGRFIRM

Nucleotide sequence

Length: 1,259

>Haaura.CG.MTP2014.S1447.g08347.01.t
ATGTGTCTTTTTGGCATTAAAAAGAGAGTCAGTGGTTTGATTTTGATCTATTACACGGCT
TTTCACAAATTTAACGCTTACAAGAGCTTGAAGGACGACAGAAGAAATCAAAAGCGAACG
GAGATTCAGTGAAAGAAGAAATAAATCAGTCAATTGAACGTTGCATCTGCGAACTAGAGT
CAAGAAAACAAATGTTGATTGATGAAGTTGATGCGTTTGTTGCTATGGAGACAAGATCTC
TTCAAGTTGAGCAGGAGAATCTCGAAGTGGAACTTGCAACCATGAGTAGTTTTTGTGAAA
ATGCAGAACAAAGAAATAAAATATTTGATGAAGTTTCAGAGTCAATTCCTGCGAACACTA
GGAGGCAGCAACAGAGCGAAACATTGCAATTAACACGACAGAGCAGAGAACATTTACGAA
ACAACAGACTTGTCACGAATAATATTGAAGATAAAATTGGAAGAACAATAAAGTTTCGGA
AAGAAGGTGAAAGGTCACTCCTTTGTTCGATTTCTGATTTCGGTGATGTATCGTTCCACG
TTCCGTCTCGCGTCTCGATGACATTCGGAAGCGATCTGACAATGAATGAAGCAGAGATTC
AACGAGTGATGTTGGACGATTACAGTCCAAGATATGGAAGAAGAGCCGATCGCATAGAAG
AACAACCACCGACATTCATATCTCCGTCCCCCGGTTCAACTGATACCAGCTCTCCGGCGC
CCACTAGCACACAAACTATAAATAATGATTCTCAGAGGAATCAAACAGATCCAGATACAG
CAGCCAATCGTCTGCGAGGAAATCGCAATCGTAGAGGCCGCGGTCGATTGATCTCACAAA
CACCGTCATATTTCACGATCGGGAACAGCAGACCAGCGAATAACAGCACAGTGTCACGAA
GCGACCTTTCACCTCACGTTACTGGGATTCGTACAACGCTCTGGCAATATAGAAGTAAAG
GTCCAGTGAAATGTTGTTTTGGAATGAAAGGAAGTGACAACGGATGCTTGAATTGGCCGA
GAGGGATCGCAGCGACATCAGAAGGAAATATTATAGTCGCAGACAGCAGCAATCACAGAG
TTCAAATCTTTGACTCGTCCGGTATATCCGTCCACTCCTTTGGCAGCTATGGCAGCGGTG
ACGGGGAATTCGACTGCTTGGCAGGAGTCTGTGTGACCACGCAAGGCTGGATTATAACCT
CGGATCGTTACAACCACAGAATCCAGATATTTGACAGCCAGGGACGATTTATTCGGATG

InterProScan

Gene3D	6-blade_b-propeller_TolB-like (IPR011042) - T[250-356] 5.4E-33
ProSiteProfiles	NHL_repeat_subgr (IPR013017) - T[260-303] 16.551 - T[307-350] 14.926
Pfam	NHL_repeat (IPR001258) - T[273-300] 1.3E-9 - T[320-347] 1.1E-5

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LIN41_HUMAN	45.652 %	84.3	9.81E-18