- Transcript 'Haaura.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Haaura.CG.MTP2014.S141.g02588.02.t
Possible name(s)
PRDM10; PRDM15; PRDM4
Gene model
Location
S141 [3,015 / 5,166]
Amino acid sequence
Length: 717
>Haaura.CG.MTP2014.S141.g02588.02.p
MSLIHNNLVAFEPESLPKPAYTVENKVTKPKAQASLPDILTTKQTNDGVGVFARDSIPRA
TQFGPVDAPMGAKTKLCNQKFLLRLDPERCKNVQDSNPSNMYLDTSNENLCNWLMLIQTA
SLFSEQNLMAHQQGDSIFYTSCKDISPNEELKVWYSPTYAMFLGMPTLVEESLSITEINN
TNYSMKGRKQKASNRMQAYMNSLGSERDVRSVPPKKRGWKRTAKEKRPESPASNTAYTSG
LFTAANSVLAIKKTRGFQNKCFVCPQCRKSFKNRQKLRIHSVIHSDERNFLCHHCGRTFK
RKDKLRNHIITMHFHNTSKRKTEAKVVNLDSYEYKCTSCEIGFHRRGMLINHFIKKHPEL
PESRYCEFLTRPIVKPILSYKCLYCDKVYKSSCKRKQHIANKHPTQPFPPKQKINEGKMN
VISKGCITVEPVCCPYCIRQYSTTNKRNKHVREKHANELQNISSMQNPIQETPKDNLMDI
YAVHGNGDVANDHDLLTQAMSAIEPALSEHAHTSSFSSEFLLQPENEMHGKDMQFQHCVD
MPKNPLMIQYNNQNTIPGCHIENTDSRINYMQPKKQIMYKTRVLNSLSQADHTWKQLVLN
GVDQMGTCSAMSDLSKQSNYNAVEQTYGSLPDHNMIAILEPMNPQDTSSMVGNTVLTNHY
KKNCTISEHGIPHHHILQTVFNAPGNDNTNMEHFENSTHSDETTNWMCHPYNNIPR*
Nucleotide sequence
Length: 2,151
>Haaura.CG.MTP2014.S141.g02588.02.t
ATGTCTTTAATTCATAATAACCTTGTTGCATTCGAACCAGAATCACTACCAAAACCGGCC
TATACAGTCGAGAATAAAGTTACCAAGCCCAAAGCCCAGGCCTCTCTCCCAGACATTTTA
ACAACAAAACAAACCAACGATGGTGTCGGTGTTTTTGCTCGTGATTCAATTCCAAGAGCC
ACCCAATTTGGTCCCGTTGATGCCCCCATGGGGGCAAAAACTAAGCTATGTAACCAAAAA
TTTCTGCTCCGATTAGATCCGGAGAGATGCAAAAACGTGCAAGATTCGAATCCATCAAAT
ATGTATCTCGACACTAGCAATGAAAACCTTTGTAATTGGTTGATGCTTATCCAAACAGCA
TCCCTTTTCTCTGAGCAAAATTTGATGGCACACCAACAGGGAGACTCGATATTTTACACA
AGCTGCAAGGATATTTCTCCAAACGAGGAGTTGAAGGTTTGGTATTCTCCGACATACGCA
ATGTTTCTCGGAATGCCGACGCTAGTGGAAGAGTCGCTTTCAATCACTGAAATTAACAAT
ACAAACTACAGTATGAAGGGCCGAAAGCAGAAGGCATCTAATCGTATGCAGGCATATATG
AATTCACTGGGTTCAGAACGTGATGTGAGGTCTGTTCCTCCCAAGAAGAGGGGTTGGAAA
AGAACAGCTAAAGAAAAAAGGCCAGAAAGCCCAGCCAGTAACACAGCATATACTTCTGGG
TTATTCACTGCTGCAAATTCAGTACTTGCCATAAAGAAAACTCGGGGTTTTCAGAACAAA
TGTTTTGTATGTCCGCAATGCAGAAAATCTTTTAAAAACAGACAGAAACTGCGGATTCAT
TCTGTAATCCATTCAGACGAACGTAATTTTCTGTGCCATCACTGTGGTCGAACGTTCAAA
CGCAAAGACAAGTTGCGAAATCATATTATCACAATGCATTTCCACAATACATCCAAGCGA
AAAACAGAGGCAAAGGTTGTAAACCTCGACAGTTATGAATACAAATGCACCTCGTGTGAA
ATAGGTTTCCATCGTAGAGGTATGCTTATCAATCATTTTATAAAAAAGCACCCCGAGTTG
CCAGAGAGCAGATATTGTGAGTTTCTTACAAGACCTATTGTGAAGCCCATTCTCAGTTAC
AAATGTCTTTACTGCGATAAAGTTTACAAATCGAGCTGCAAACGGAAACAACATATTGCA
AACAAGCATCCAACTCAACCTTTTCCTCCAAAGCAAAAAATAAACGAGGGAAAAATGAAT
GTTATTTCGAAAGGCTGTATCACAGTTGAGCCGGTATGTTGTCCATATTGCATTAGACAA
TATTCTACAACAAACAAAAGGAATAAACATGTCCGAGAAAAGCACGCCAACGAATTACAG
AACATATCTTCTATGCAAAATCCTATTCAAGAGACGCCGAAGGATAATCTGATGGACATT
TATGCAGTTCACGGTAATGGGGACGTCGCCAACGACCATGACCTTCTGACTCAAGCCATG
TCGGCAATCGAACCCGCACTGTCCGAGCACGCTCACACGTCCTCGTTCTCCTCTGAATTT
TTGCTTCAGCCAGAAAACGAGATGCACGGCAAGGACATGCAGTTCCAGCATTGCGTAGAT
ATGCCAAAAAATCCTCTCATGATACAGTACAACAACCAGAATACCATTCCCGGATGTCAC
ATAGAAAACACAGACAGCAGGATAAATTATATGCAACCTAAGAAGCAAATTATGTACAAA
ACACGGGTACTGAACTCACTATCACAAGCTGATCATACATGGAAGCAGTTAGTCTTAAAC
GGGGTAGATCAAATGGGAACATGCAGCGCAATGTCAGACTTATCAAAGCAATCGAATTAC
AATGCTGTAGAACAAACTTATGGTAGTTTACCTGATCATAACATGATAGCCATTCTTGAG
CCCATGAATCCACAGGACACGTCCTCCATGGTTGGTAACACCGTCCTTACTAATCACTAT
AAGAAAAACTGCACCATTAGTGAGCACGGCATTCCTCATCATCATATACTGCAAACTGTT
TTTAATGCACCTGGAAATGACAACACAAACATGGAACATTTTGAAAATTCGACACACAGT
GATGAGACTACGAACTGGATGTGTCATCCATACAATAATATACCTAGATAA
| ProSiteProfiles |
SET_dom (IPR001214) - T[35-156] 10.413 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[260-310] 1.52E-11 |
| SMART |
Znf_C2H2_type (IPR013087) - T[262-284] 0.0023 - T[290-313] 0.0099 - T[334-357] 0.32 - T[380-403] 0.25 - T[432-455] 7.8 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[262-289] 12.736 - T[290-320] 11.198 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[264-284] . - T[292-313] . - T[336-357] . - T[382-403] . - T[433-455] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PRD10_HUMAN | 37.676 % | 182 | 8.89E-48 |
| PRDM4_HUMAN | 24.501 % | 97.4 | 7.28E-21 |
| PRD15_HUMAN | 36.691 % | 92.4 | 4.31E-19 |
