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TRANSCRIPT CARD

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  1. Transcript 'Haaura.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S1346.g08151.01.t

Possible name(s)

TRIM2; TRIM3; TRIM71

Location

S1346 [1,953 / 5,228]

Sequences

Amino acid sequence

Length: 394

>Haaura.CG.MTP2014.S1346.g08151.01.p
ITELEGRQKKSKANGDSVKEEINQSIERCICELESRKQMLIDEVDAFVAMETRSLQVEQE
NLEVELATMSSFCENAEQRNKIFDEVSESIPANTRRQQQSETLQLTRQSREHLRNNRLVT
NNIEDKIGRTIKFRKEGERSLLCSISDFGDVSFHVPSRVSMTFGSDLTMNEAEIQRAMLD
DYSPRYGRRADRIEEQPPTFISPSPGSTDTSSPAPTSTQTINNDSPRNQTDPDTAANRLR
GNRNRRGRGRLISQTPSYFTIGNSRPANNSTVSRSDLSPHVTGIRTTLWQYRSKGPVKCC
FGMKGSDNGCLNWPRGIAATSEGNIIVADSSNHRVQIFDSSGISVHSFGSYGSGDGEFDC
LAGVCVTTQGWIITSDRYNHRIQIFDSQGRFIRM

Nucleotide sequence

Length: 1,182

>Haaura.CG.MTP2014.S1346.g08151.01.t
ATTACAGAGCTTGAAGGACGACAGAAGAAATCAAAAGCGAACGGAGATTCAGTGAAAGAA
GAAATAAATCAGTCAATTGAACGTTGCATCTGCGAACTAGAGTCAAGAAAACAAATGTTG
ATTGACGAAGTTGATGCGTTTGTTGCTATGGAGACGAGATCTCTTCAAGTTGAGCAGGAG
AATCTCGAAGTAGAACTTGCAACCATGAGTAGTTTTTGTGAAAATGCAGAACAAAGAAAT
AAAATATTTGATGAAGTTTCAGAGTCAATTCCTGCGAACACTAGGAGGCAGCAACAGAGC
GAAACATTGCAATTAACACGACAGAGCAGAGAACATTTACGAAACAATAGACTCGTCACG
AATAATATTGAAGATAAAATTGGAAGAACAATAAAGTTTCGGAAAGAAGGTGAAAGGTCA
CTCCTTTGTTCGATTTCTGATTTCGGTGATGTATCGTTCCACGTTCCGTCTCGCGTCTCG
ATGACATTCGGAAGCGATCTGACAATGAACGAAGCAGAGATTCAACGAGCGATGTTGGAC
GATTACAGTCCGAGATATGGAAGAAGAGCTGATCGCATAGAAGAACAACCACCGACATTC
ATATCTCCGTCCCCCGGTTCAACTGATACCAGCTCTCCAGCGCCCACTAGCACACAAACT
ATTAATAATGATTCTCCGAGGAATCAAACAGATCCAGATACAGCAGCCAATCGTCTGCGA
GGAAATCGCAATCGTAGAGGTCGCGGTCGATTGATCTCACAAACACCGTCATATTTCACG
ATCGGGAACAGCAGACCAGCGAATAACAGCACAGTGTCACGAAGCGACCTTTCACCTCAT
GTTACTGGAATTCGAACAACACTCTGGCAATATAGAAGTAAAGGTCCAGTGAAATGTTGT
TTTGGAATGAAAGGAAGTGACAACGGATGCTTGAATTGGCCGAGAGGGATCGCAGCGACA
TCAGAAGGAAATATTATAGTCGCAGACAGCAGCAATCACAGAGTTCAAATCTTTGACTCG
TCCGGTATATCCGTCCACTCCTTTGGCAGCTATGGCAGCGGTGACGGGGAATTCGACTGC
TTGGCAGGAGTCTGTGTGACCACGCAAGGCTGGATTATAACCTCGGATCGTTACAACCAC
AGAATCCAGATATTTGACAGCCAGGGACGATTTATTCGGATG

InterProScan

Gene3D
6-blade_b-propeller_TolB-like (IPR011042) - T[288-394] 6.3E-33
ProSiteProfiles
NHL_repeat_subgr (IPR013017) - T[298-341] 16.551 - T[345-388] 14.926
Pfam
NHL_repeat (IPR001258) - T[311-338] 1.5E-9 - T[358-385] 1.3E-5

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LIN41_HUMAN 45.652 % 84.3 1.57E-17